Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02025 ATGCCAGATTTGGGAAACCTTTCTCTCTCCGCGCCTCTCACACTCTCTCGCTGCTCCTCCAATGATGCCCTTGACGCTCCCGTCAAAACCCTACCCAATGCTTTCAGTTCCGAGCCTGGTTCCGAACCTGCCTTTGAGCCTCGGGTTTTGAAGCGCACCCGAGGCTCCCTGGATCGGGTCAAGAAGCCCCCCATCGCCGACAAGGCCTTCCAGGATCGCCTCAAAGATCTTCCTTTTCTAGTTGGCGCTCCCATGATGGAAGAATGTTGTTTTTGCTGCCATTTTATTTACCCTGGTGATGATGAGCTCTTGTGTTCGGTTCGAGGATGTGACGCACGCTACCATTCTGAATGTGCAAAAGATGCTGTTGGGGCTTCCAATCTGAAAAAATTCAAGTGTCCACAACATGTGTGCTTCATTTGCAAGCTAAAGAAGCAGTTTAGGTGTGTTAGGTGTAAAATAGCATTCCATAGTAAATGTGCACCATGGTCAGATTCAGTGGTGCAACTAAAAGATCATCCCGGGCAAGCTGTTTGCTGGAGGCATCCTTCTGATTGGCGCTTGGATAGAAAGACTGATGCTTCAACAAGTGACATTTCGGAAGTATTTTGTCGCTTGCCTCTTCCATTTATCAGTGAGGAGTTTAAGATTGACTTCACTTGGAAAGACATGGACAATAAGATGGAGCAGCCATCACCATATGTACACATAAGACGCAATATATACTTAGTAAAGAAGAAACGTAGTGATGCGGATGATGGTGCAGGGTGCACCAGTTGCAGTTCTACTTCTACATGTTCTGATGATTGTGTGTGCAGGGTTCAATGCATAAGCTGTTCAAAGGCATGTCGCTGCTCAGAAAATTGCAACAATCGACCATTTCGCAAGGAGAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGATGGGGAGTGGAGGCCGCTGAAACAATTGATAAAGGTGGATTTATAATTGAGTATATTGGAGAAGTCATTGACGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACAGGGGTGTACAGAATTTTTACATGTGTGAGATTCGGAAAGACTTCACAATAGATGCAACTTTCAAAGGAAATACTTCACGCTTTTTGAACCATAGCTGTGATCCCAACTGTGTTTTGGAGAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCCGCTTGTTCAATAGAAGCTGGAGAGCCGTTAACATATGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCTGCAAATTGTCAAGGCTTTCTAGGGACAAAAAAGAAAATTGGCAAGCTAGACCTCTATTGGGGTTCAAAACGTAAGAGAACATCGAAAGCTTCTTGCATTACGTTAGTAACAGCTGTATGA 1407 0.4442 MPDLGNLSLSAPLTLSRCSSNDALDAPVKTLPNAFSSEPGSEPAFEPRVLKRTRGSLDRVKKPPIADKAFQDRLKDLPFLVGAPMMEECCFCCHFIYPGDDELLCSVRGCDARYHSECAKDAVGASNLKKFKCPQHVCFICKLKKQFRCVRCKIAFHSKCAPWSDSVVQLKDHPGQAVCWRHPSDWRLDRKTDASTSDISEVFCRLPLPFISEEFKIDFTWKDMDNKMEQPSPYVHIRRNIYLVKKKRSDADDGAGCTSCSSTSTCSDDCVCRVQCISCSKACRCSENCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIIEYIGEVIDDALCEKRLWDMKYRGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAACSIEAGEPLTYDYRFVQFGPEVKCHCGAANCQGFLGTKKKIGKLDLYWGSKRKRTSKASCITLVTAV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02025 468 SUPERFAMILY SET domain 215 427 IPR046341 -
Gma06g02025 468 PANTHER SET DOMAIN PROTEINS 72 463 - -
Gma06g02025 468 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 468 IPR025787 -
Gma06g02025 468 ProSiteProfiles SET domain profile. 298 415 IPR001214 GO:0005515
Gma06g02025 468 CDD SET_ASHR3-like 299 437 - -
Gma06g02025 468 SMART PostSET_3 421 437 IPR003616 -
Gma06g02025 468 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 72 463 - -
Gma06g02025 468 ProSiteProfiles AWS domain profile. 252 298 IPR006560 GO:0005634|GO:0018024
Gma06g02025 468 Pfam SET domain 309 414 IPR001214 GO:0005515
Gma06g02025 468 ProSiteProfiles Post-SET domain profile. 421 437 IPR003616 -
Gma06g02025 468 Gene3D SET domain 208 455 IPR046341 -
Gma06g02025 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 185 IPR013083 -
Gma06g02025 468 SMART set_7 298 421 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02025 Gma-Chr6 29269306 29288746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02025 279 436 C2H2 Transcription Factor Family AT2G23740 37.989 3.37e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma06g02025 SET 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02025 - - gmx:100791481 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g02025 06 29269306 29288746 Gma06g02025 06 29269306 29288746 ECH