Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02006 ATGGTGCAAACAAGGAAGTTCAGAGGTGTCAGACAGCGCCATTGGGGTTCATGGGTATCAGAAATTCGCCACCCACTTCTCAAGAGGAGGGTGTGGCTAGGCACGTTCGAAACTGCAGAAGAAGCAGCACGAGCCTACGACCAAGCTGCGATATTGATGAGCGGGCGAAACGCAAAAACCAACTTCCCAATAGTCCAAACCCCAGAGGGTGACCCAAAGACAACGCTAACACCAACCGATCACGAAACCCCATCGTCGTCCATGACCACCTCGAAGGAACTGGAAGAGATTCTTCACGCCAAGCTCAGAAAGTGCGGGAAGCTTCCGTCCCCTTCCATGACCTGCCTGAGGCTCGACCCCGAGAATTCCCACATCGGAGTGTGGCAGAAGCGCGCCGGCCAGCATTCCGACTCCAACTGGGTCATGATGGTTCCTCCCCTCGGAAAGAAGGGTGGTGCCAACGAAGGAGGTACTGGAGATGGTTCTTGTTCTAATAATCCCTCTTCGTTCTCTAAGTGCGATCCTGCCCCGCAAGTGGTGAGACAGGAGCTTCTAAGGACAGAGATGGACGAGGAAGAGAGAATTGCGCTACAAATGATAGAAGAACTCCTCGGCAGGAACTGCCCCATCACTAGCCCTTCTTTCAACAACTTATATTAA 660 0.5288 MVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIVQTPEGDPKTTLTPTDHETPSSSMTTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQHSDSNWVMMVPPLGKKGGANEGGTGDGSCSNNPSSFSKCDPAPQVVRQELLRTEMDEEERIALQMIEELLGRNCPITSPSFNNLY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02006 219 MobiDBLite consensus disorder prediction 149 174 - -
Gma06g02006 219 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gma06g02006 219 MobiDBLite consensus disorder prediction 158 174 - -
Gma06g02006 219 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 215 - -
Gma06g02006 219 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 MobiDBLite consensus disorder prediction 62 91 - -
Gma06g02006 219 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Gma06g02006 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 215 - -
Gma06g02006 219 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02006 Gma-Chr6 27829240 27831231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02006 1 207 AP2-EREBP Transcription Factor Family AT1G15360 59.242 1.62e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g02006 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02006 - - gmx:100819868 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01395 04 31451807 31453931 Gma06g02006 06 27829240 27831231 GST
Gma17g01076 17 9245148 9246073 Gma06g02006 06 27829240 27831231 PCT
Gma13g01473 13 29454981 29455962 Gma06g02006 06 27829240 27831231 PCT
Gma06g02006 06 27829240 27831231 Gma17g01076 17 9245148 9246073 PCT
Gma06g02006 06 27829240 27831231 Gma13g01473 13 29454981 29455962 PCT