Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g02003 ATGGGTTTGGAAGTGTTTGGTTCTGTTCTAGTTCTGACACTCTTCTTGAAGCACTTGGCATCTCAGCAACCAAACACTGATGATTTCTTTGTGTCAGAGTTCTTGAAGAAGATGGATTTAGCATCCTCCCAGGTCTACAACTTTTCTTCAGCTTCTGTTTGTTCATGGCATGGGGTTTCATGTGATGCCAAGAGAGAACATGTTGTTGGGTTAGTCTTTTCTGGCATGGGAATTTCTGGTCCTGTTCCAGATACTACCATAGGAAAGCTCAGCAAGCTTCAAGCTTTGGACCTTAGCCACAACAAAATCACGGACTTGCCTTCTGATTTCTGGAGTTTTGGCTTGCTCAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAACAACATTGGAAACTTTGGTTTGCTACAAGTGTTTGACTTGTCCAGCAACAATTTCTCTGGGCAAATTCCTGAAGCTATTAGTTCACTGATGAGTCTGAAAGTCCTCAAACTTGACCACAACAGGTTCCAGCAAAGAATACCTTCTGGGATTCTCAAGTGTCACTCTCTAGTTTCCATTGACCTTTCTTCAAATCAACTAAGTGGGGCAGTTCCAGATGGTTTTGGTGATGCTTTTCCTAATCTCATTTCCTTGAACCTTGCTGGGAATAGTATTAATGGCAGTGATTTAGATGTTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATTCCTTTAATGGTTCTGTGATGAGTATGTTTCATGGAAGGCTTGAGGTCATGGACCTTAGCAGAAACCAATTTGAAGGTCACATTTCTCAGGTACACTCCATCTCTAACTACAATTGGTCTCATTTAGTTTATTTGGATTTGTCACAGAATCAGCTGGTTGGGGAGATTTTCCAAAATTTGAATGAATCCAAGAATCTAAAGCACCTTAATCTTGCTCACAATAGATTTAGCAGACAGAAATTCCCCAAGATTGAAATGCTCTCGAGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCTGAAATCTCAAAACTTAGTAATTTGAGTGCACTTGATGTTTCTATGAATCATCTTATAGGGAAAATCCCTTTACTAAGCAATAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATTTGAGTGGAGATGTCCCTTCATCAGTCATAGAAAAACTTCCTTTAATGGAGAAATACAACTTCTCTTATAATAACTTAACCTTCTGTGCTTTGGAAATCAAACCAGCTATCCTCCTAACAGCATTCCATGGATCAGTGAACAGTTGCCCAATTGCTGCAAACCCAAGTCTTCTCAAAAAAAGAGCCACTCAAGATAAGGGAATGAAGCTAGCTCTGGCGTTGACCCTCTCAATGATATGCTTGGTTGCTGGGCTTTTGCTTCTAGCATTTGGTTGCCTTAAGAAGACAAAACCATGGCCTGTTAAGCAAACTTCATACAAAGAAGAACACAACATGTCAGGTCCATTTTCATTCCACACTGATTCAACCACTTGGGTGGCTGACGTTAAGCAAGCGACATCTGTCCCAGTAGTAATCTTCGACAAGCCACTGTTAAATATTACATTCGCAGATCTATTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTTTGGCTGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTTCTACCTGGTGGTATTCAAGTAGCAGTTAAAGTTCTGGTAGTTGGATCTACTCTGACAGATAAAGAAGCTGCAAGAGAGCTTGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATACTGTGTAGCTGGGGATCAGAGGATTGCCATATATGACTACATGGAGAATGGAAACTTGCAAAATTTGCTTTATGACTTGCCACTTGGAGTACTACAAAGGCCAGATGATTGGAGCACAGATACATGGGAAGAAGAAGATGACAGTAACGGGATTCGGAATGCAGGATCGGAAAGAGTGCTCACAACTTGGAGATTTCGCCATAAAATCGCACTCGGGACTGCCCGAGCATTGGCATTTCTGCATCATGGATGCTCCCCACCGATCATTCACAGAGATGTTAAGGCCAGCAGTGTTTATTTGGATTATAACTTGGAGCCAAGATTGTCAGATTTTGGACTGGCTAAGATTTTCGGGAGTGGCTTGGATGAGGAGATTGCACTTTGTTCACCTGGTTATGCTCCACCAGAGTTTTCTCAACCAGAATTCGATGCCTCAGTTCCAAAATCCGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACCGGGAAGAAGCCGGTTGGAGATGATTATCCTGATGAGAAAGAAGCCTCTTTGGTTAGTTGGGTCAGAGGACTAGTGAGAAAGAACAAAGCTTCAAGGGCTATCGATCCAAAAATTCGCGATACTGGAGCAGAAGTGCAGATGGAGGAGGCCCTTAAAATTGGTTATCTTTGCACTGCTGACCTTCCTTCCAAGCGACCGAGCATGCAGCAAATAGTTGGACTTCTTAAAGATATTAAACCTTCTGCTAATTAG 2571 0.4177 MGLEVFGSVLVLTLFLKHLASQQPNTDDFFVSEFLKKMDLASSQVYNFSSASVCSWHGVSCDAKREHVVGLVFSGMGISGPVPDTTIGKLSKLQALDLSHNKITDLPSDFWSFGLLKSLNLSSNQISGSLTNNIGNFGLLQVFDLSSNNFSGQIPEAISSLMSLKVLKLDHNRFQQRIPSGILKCHSLVSIDLSSNQLSGAVPDGFGDAFPNLISLNLAGNSINGSDLDVSGLKSIVSLNISGNSFNGSVMSMFHGRLEVMDLSRNQFEGHISQVHSISNYNWSHLVYLDLSQNQLVGEIFQNLNESKNLKHLNLAHNRFSRQKFPKIEMLSRLEYLNLSKTSLIGYIPAEISKLSNLSALDVSMNHLIGKIPLLSNKNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLTFCALEIKPAILLTAFHGSVNSCPIAANPSLLKKRATQDKGMKLALALTLSMICLVAGLLLLAFGCLKKTKPWPVKQTSYKEEHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIQVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRPDDWSTDTWEEEDDSNGIRNAGSERVLTTWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALCSPGYAPPEFSQPEFDASVPKSDVYCFGVVLFELLTGKKPVGDDYPDEKEASLVSWVRGLVRKNKASRAIDPKIRDTGAEVQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIKPSAN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g02003 856 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
Gma06g02003 856 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
Gma06g02003 856 SUPERFAMILY L domain-like 49 419 - -
Gma06g02003 856 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Gma06g02003 856 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 853 - -
Gma06g02003 856 SUPERFAMILY Protein kinase-like (PK-like) 533 849 IPR011009 -
Gma06g02003 856 Pfam Leucine Rich Repeat 379 397 IPR001611 GO:0005515
Gma06g02003 856 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Gma06g02003 856 Gene3D Ribonuclease Inhibitor 279 375 IPR032675 -
Gma06g02003 856 ProSiteProfiles Protein kinase domain profile. 548 856 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g02003 856 Gene3D Ribonuclease Inhibitor 376 425 IPR032675 -
Gma06g02003 856 SMART LRR_sd22_2 90 108 - -
Gma06g02003 856 SMART LRR_sd22_2 307 333 - -
Gma06g02003 856 SMART LRR_sd22_2 283 306 - -
Gma06g02003 856 SMART LRR_sd22_2 377 404 - -
Gma06g02003 856 Pfam Protein tyrosine and serine/threonine kinase 552 846 IPR001245 GO:0004672|GO:0006468
Gma06g02003 856 SMART LRR_typ_2 90 112 IPR003591 -
Gma06g02003 856 SMART LRR_typ_2 161 185 IPR003591 -
Gma06g02003 856 SMART LRR_typ_2 378 401 IPR003591 -
Gma06g02003 856 SMART LRR_typ_2 113 137 IPR003591 -
Gma06g02003 856 SMART LRR_typ_2 210 233 IPR003591 -
Gma06g02003 856 SMART LRR_typ_2 186 208 IPR003591 -
Gma06g02003 856 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Gma06g02003 856 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Gma06g02003 856 PRINTS Leucine-rich repeat signature 93 106 - -
Gma06g02003 856 PRINTS Leucine-rich repeat signature 355 368 - -
Gma06g02003 856 ProSiteProfiles Leucine-rich repeat profile. 379 401 IPR001611 GO:0005515
Gma06g02003 856 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 853 - -
Gma06g02003 856 Gene3D Transferase(Phosphotransferase) domain 1 658 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g02003 Gma-Chr6 26777728 26780298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g02003 87 851 Receptor kinase-like Gene Family AT5G07280 31.864 2.31e-110 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gma06g02003 PK_Tyr_Ser-Thr 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g02003 - - gmx:100807051 1694.09