Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01956 ATGGAGGGTGGTGGTGACGTTAAGGGTTGGGCGTTGGAGTTTCTTCTCCGGGCTCAGAACCCAGTCGTTCCCAGTAACCTAATTAAGAAAGTCATTCTAATAGTCCCCCTTTCAGACTTTTATTCCAGGCTCAAGAAGACGCTTCTTCTCCGAGCCCTTCAAGATCACTTGTTCGCTGTCTCTGTCCCTGAGTCCGTTCTCGAAACCCTCGAGCAAGTCGAGGAACTCCACCGCCTCGGCGATGACGACGACGGAGCTCTGGTCACCACCTCATCCGCCATGAGCGCCGCCTACTGTGCCGTCGCGGTGGAGTGCACTCTCAAGCACCTGCTGCTGGAGCTCCACAACAACCCTGCTTATCTCGGCGCGGTGAACAGGATATGGCGCGGTAGGGTTCGGCTCATGAGCGGTTCCGGGGAGGGGAGCCTCCTGCTCTCGCCAGAGCTGGAGCGGTGGAGAACCGACATTGAAGCTTCCCTTCTGGATTCGTCGGTGAGGGAGAGGTTGGCCTCCATTGATACAAGAAGGGATGCCGTCTTCAAGCTCCGGGATTATTTGAAGGAAGCTTGGACCGATTTGGGGCCTTCATTTCTTGAGCGAGCGGCGTTGGCGCATATAAACAACAATGCCCTAGCCGCGAATCACTCTGAGGATTCTCAACAGCCGGAGAGAGAAATTGAGAAGTGCACTGCTGCTCctgctgaggaagtgcatccctcaacagatgttgagatccaaaaggttggggagtgcggttctgtggagttgcaaaagttggctgaggattctctacttgatttgttggaagtgaatgaggaggcatcgatggaagaacaaagtagagatgtagatgtaccttgcccacatgctattaatgacaatgaggctgatctgatggaaaaggatcaaacttctATCCCTCATAATCATGACCATAAGCCAAGTTTAATGGAAAGAAATAGTTCTGCTCGTATTTATGAGTGGGATGATTCAATAGATGGCTTGGAGGATGGAACATCAGATCATGCAACTAGATTTAATTTGCCTAGTCCCAAGGGGAGAAAAGTTTCTCCATTGAATAAGTACAAACCTGCAAACATTACAAAGAGGAGAAAAGTGAAAAAATGGAGTCAGTTGGAAGAGGAGACTCTAAGGACTGATGTAGACAAGTTTGGCAGGGGAAATTGGAAGTTAATCCTAGATTCTCACAAAGATATATTTGAAGAGAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAATATGACGTAA 1272 0.4112 MEGGGDVKGWALEFLLRAQNPVVPSNLIKKVILIVPLSDFYSRLKKTLLLRALQDHLFAVSVPESVLETLEQVEELHRLGDDDDGALVTTSSAMSAAYCAVAVECTLKHLLLELHNNPAYLGAVNRIWRGRVRLMSGSGEGSLLLSPELERWRTDIEASLLDSSVRERLASIDTRRDAVFKLRDYLKEAWTDLGPSFLERAALAHINNNALAANHSEDSQQPEREIEKCTAAPAEEVHPSTDVEIQKVGECGSVELQKLAEDSLLDLLEVNEEASMEEQSRDVDVPCPHAINDNEADLMEKDQTSIPHNHDHKPSLMERNSSARIYEWDDSIDGLEDGTSDHATRFNLPSPKGRKVSPLNKYKPANITKRRKVKKWSQLEEETLRTDVDKFGRGNWKLILDSHKDIFEERTEVDLKDKWRNMT 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01956 423 Gene3D - 376 423 - -
Gma06g01956 423 SUPERFAMILY Homeodomain-like 370 422 IPR009057 -
Gma06g01956 423 ProSiteProfiles Myb-like domain profile. 368 423 IPR001005 -
Gma06g01956 423 Pfam Myb-like DNA-binding domain 374 422 IPR001005 -
Gma06g01956 423 PANTHER MYB TRANSCRIPTION FACTOR 6 423 - -
Gma06g01956 423 PANTHER MYB TRANSCRIPTION FACTOR 6 423 - -
Gma06g01956 423 CDD SANT_TRF 374 423 - -
Gma06g01956 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 368 423 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01956 Gma-Chr6 22866399 22872742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01956 10 422 Single Myb Histone (SMH) Gene Family AT1G15720 28.606 4.94e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma06g01956 Myb_DNA-binding 6.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01956 - K11111 gmx:100811657 685.641