Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01955 ATGATTGAGGTTCCATTGTCTTACCATAGACAGTGGAGGCCACATTATCCGACGTATGTTTTGTTTCAGCATAATGGAACCACACATTTTATTAGGCTTCGCAGATATGGTAGCCGATACTTTTTTTCTGATGGCCTCAAAGACTTTAGAAGAACTCACGGAATTGACGACAGCGTCATCCTGCGGTTTTTTGGTGGTGACAAAAATACCACCTTCAAGGTGGATGTCATTGGACCTATCCTTGGGCAGCTCTGTCCAAGACTAATGGCACATATTGCTGACAAGATAAAAAACATTGATGGATCTAAAGAAACTCTAAAACTTACTGTAAGGATAATTGAGCTCTGGTTTGTTGGGACACCGGGCAGGTCTGAACAAGCTGAGATGATCATTGTTGACTCTGACGGTGATCAGATCCACGTGGTCTGTAAGCAAGACCAGTTAAAAGCATGGAAAATGGATTTGAAGGAAGGTTGTACTTATGTGATGCACAATTTTAGAGTCACTAAGAATGATAGACAGTACATAGTTTGTGATCATCCATATAAATTGATATTTATTGGAGTTACAGTTGTCAGACAGTGTGAATTAGATGGCCTTCCTTTAAAAAAGTATAGATTTGTAGATTTTTCAGATGTCATTGCTGGCCAATTACAGCCTGACCTATTAGTAGACATCATTGGTGTTGTCGGCGAGTTTGTCTTTCATCATATTTCACCTATAAGTAAGAGAGTTGTTTTTAAGCTTATGAATTTGAGTAACCAATTGGTGTCTTGCACTCTATGGGACGATTATTGTGTCCAATTTCTGGAATATTTGGATCACCATGAGAGTGAAGGGCCTATTATTGTGTTGTTGACCAATGCCAGAATTAAAGAGGGCCAAGGATCCTATCCATGCTCGGTTAGCAATTCTTTGAAGGCTTCTAAATTGACTATTAATGAGCCACTGACACCAATTGAAGAATTCAATCAGAAATATAGAGTTGAAGTGATGGTCAATTATAAAGATCAAAACACAAAATTTCTCCTGTGGGATCGTGAATGCACTGAATTGATTGGGCAGTCAGCTGATGAAGTCAATACCCTCAAAATAGAAGATGGTGATCTAGATTTAAATGCCTCCCCAAAAGCACTTGATAAACTACTGGGTCATCTGCTCGCCTTCAAAGTCAAAATCCAGCCGCAGTATAAAAATTCTACTGTTTTGAAGTGCTCCAGTGACTTAGCTTTAATTAATGATGTTCTGGACATGTTTCCTGATGCTGAGCAATCCATTTCTATAACAGTAGACCATGATCCACTTATTGGACTTCCCTTGACACCAACAAAATGA 1335 0.3903 MIEVPLSYHRQWRPHYPTYVLFQHNGTTHFIRLRRYGSRYFFSDGLKDFRRTHGIDDSVILRFFGGDKNTTFKVDVIGPILGQLCPRLMAHIADKIKNIDGSKETLKLTVRIIELWFVGTPGRSEQAEMIIVDSDGDQIHVVCKQDQLKAWKMDLKEGCTYVMHNFRVTKNDRQYIVCDHPYKLIFIGVTVVRQCELDGLPLKKYRFVDFSDVIAGQLQPDLLVDIIGVVGEFVFHHISPISKRVVFKLMNLSNQLVSCTLWDDYCVQFLEYLDHHESEGPIIVLLTNARIKEGQGSYPCSVSNSLKASKLTINEPLTPIEEFNQKYRVEVMVNYKDQNTKFLLWDRECTELIGQSADEVNTLKIEDGDLDLNASPKALDKLLGHLLAFKVKIQPQYKNSTVLKCSSDLALINDVLDMFPDAEQSISITVDHDPLIGLPLTPTK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01955 444 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 100 356 - -
Gma06g01955 444 Gene3D - 93 195 IPR012340 -
Gma06g01955 444 PANTHER REPLICATION FACTOR A 1, RFA1 100 356 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma06g01955 444 Pfam Domain of unknown function DUF223 128 218 IPR003871 -
Gma06g01955 444 SUPERFAMILY Nucleic acid-binding proteins 95 195 IPR012340 -
Gma06g01955 444 CDD RPA1_DBD_B_like 225 325 - -
Gma06g01955 444 SUPERFAMILY Nucleic acid-binding proteins 205 331 IPR012340 -
Gma06g01955 444 SUPERFAMILY DNA-binding pseudobarrel domain 3 78 IPR015300 -
Gma06g01955 444 CDD RPA1_DBD_A_like 107 192 - -
Gma06g01955 444 SUPERFAMILY Nucleic acid-binding proteins 319 400 IPR012340 -
Gma06g01955 444 Gene3D - 199 335 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01955 Gma-Chr6 22839488 22845588 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01955 131 376 Core DNA Replication Machinery Family AT5G45400 21.654 2.97e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01955 - - gsj:114416011 875.93