Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01950 ATGGATGAAAGGAGAGTGAATATAATCGCTGCTATATCAGTGATTACACTGATTATTCTCATAGTTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGCCTTTTTCCTGATTTTTGGTGCTGGTGTTGCTGTGATTCTTGCAGTCTTCGCTTATGTACTTGTGAGCATAAGTTACAACCGCAGAAGGAGGCTATTGGAGTCACAGTTTAAATCCGAAAGCCAAGAACTTCGAATAGAGTACAGTTTCTTAAGGAAAGTTGCAGGGGTTCCTATGAAGTTCAGATACAAGGAGCTTGAGGAAGCCACTGATGGGTTTCAAGCACTGATAGGAAAAGGTGCATCTGCTTCAGTCTTCAAAGGAATTCTCAACGATGGAACTTCGGTCGCTGTGAAACGAATCGATGCAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAAGTTGCAGCCATAGCTAGTGTGCATCATGTGAACCTTGTGAGGCTATTGGGCTATTGCAATGCTCCTACAGCACCAAGGTCAAGGATCTTGCACCTTGATGTGAAGCCAGAGAATATACTTTTGGATGAGAATTTTAGAGCACTTGTTTCGGATTTTGGTCTAGCAAAGCTAATTGGTAAGGAAGAGAGCCACAAGGAAGTGTCTGCTATTAGAGGAACAAGAGGGTACTTGGCTCCTGAGTGGCTCTTAGAGAAGGGTATTTCGGACAAGACTGATATATATAGTTATGGGATGGTTCTCTTGGAGATTGTTGGAGGAAGGAAAAACGTGTGCTCGGTGGAAATTGATGAAAGGGCCAATAAGTCCAAGAGAAAATGGCAGTATTTTCCTAAGATTGTGAATGAGAAAGTGAGGGAAGGGAAATTGATGGAAATTGTTGATCCTAGGTTGTTGGAATGTGGGGGTGTTGTTGATGAGACGCAAGTTAGGACATTGGTTTATGTTGCTTTGTGGTGTGTGCAAGAGAAGCCACGATTGAGGCCTAGCATGCCTCAAGTTGTTGATATGCTTGAAGGGCGTGTAAGGGTGGAGATGCCACCTGATACCAGAATGGTTGTTGTTGATTTTCTATGTGTGGATGAAGAAAGTGCAACTGATAGTAATAGCATGCCAAGGTTGGACTTTGTGTCGAATCAAAGAACACAAAGCAATGTGGAGTCTTCTTCTACCTACTCGTTTGCTACCACCATTATGTCAGGAAGATAG 1203 0.4331 MDERRVNIIAAISVITLIILIVVARVTLKLSKAFFLIFGAGVAVILAVFAYVLVSISYNRRRRLLESQFKSESQELRIEYSFLRKVAGVPMKFRYKELEEATDGFQALIGKGASASVFKGILNDGTSVAVKRIDAEERGEKEFRSEVAAIASVHHVNLVRLLGYCNAPTAPRSRILHLDVKPENILLDENFRALVSDFGLAKLIGKEESHKEVSAIRGTRGYLAPEWLLEKGISDKTDIYSYGMVLLEIVGGRKNVCSVEIDERANKSKRKWQYFPKIVNEKVREGKLMEIVDPRLLECGGVVDETQVRTLVYVALWCVQEKPRLRPSMPQVVDMLEGRVRVEMPPDTRMVVVDFLCVDEESATDSNSMPRLDFVSNQRTQSNVESSSTYSFATTIMSGR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01950 400 Gene3D Phosphorylase Kinase; domain 1 65 171 - -
Gma06g01950 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Gma06g01950 400 SMART serkin_6 103 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01950 400 SUPERFAMILY Protein kinase-like (PK-like) 85 337 IPR011009 -
Gma06g01950 400 Pfam Protein kinase domain 108 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01950 400 Pfam Protein kinase domain 174 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01950 400 Gene3D Transferase(Phosphotransferase) domain 1 172 353 - -
Gma06g01950 400 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Gma06g01950 400 PANTHER RECEPTOR-LIKE KINASE 172 400 - -
Gma06g01950 400 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 172 400 - -
Gma06g01950 400 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 172 - -
Gma06g01950 400 ProSiteProfiles Protein kinase domain profile. 30 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma06g01950 400 PANTHER RECEPTOR-LIKE KINASE 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01950 Gma-Chr6 22732172 22733536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01950 1 348 Receptor kinase-like Gene Family AT5G20050 50.617 6.41e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gma06g01950 Pkinase 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01950 - - gmx:100791152 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01950 06 22732172 22733536 Gma06g01950 06 22732172 22733536 ECH
Gma17g01107 17 9458508 9459854 Gma06g01950 06 22732172 22733536 PCT
Gma06g01950 06 22732172 22733536 Gma17g01107 17 9458508 9459854 PCT