Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01893 ATGGCCGAAGCAGAACACAACGATCCCACCTCGCCGGAGCGCGAGGACCAAACCAAAAGCAACAAAAAGAAGCTCCGAAAGAGAAAAAGACCTCAAAAGACCGAGCAGAAACAAGAGGAGGAGAAGAACGATGCGAACATTGATAGCGCCCAAACACAAACTGAAGATGAAGGAGAGAATCAAGAAGACACAAATGTGAACAACAACGTCTCATCTGGAATCATGAGCACCGAGTCTTTCTCCTCTCTGGGCTTGTCCGAACCCACTTCCAAAGCCATTGCAGACATGAGCTTCCACCGTATGACTCAGATTCAAGCGAAGGCAATTCCGACGCTTCTGACCGGGAATGACGTGCTTGGTGCGGCGAGAACGGGTGCTGGGAAAACCCTAGCGTTTTTGGTTCCGGCGGTGGAGTTGTTGTACAACGTTCAGTTTACGCCGCGGAACGGGACGGGTGTTGTTGTCATATGCCCGACGAGGGAGCTGGCGATTCAGACGCACGCCGTGGCGAAGGAGCTGCTGAAGTATCACTCGCTGACGCTTGGGTTGGTGATTGGGGGTTCCGGGAGGAAGGGAGAGGCGGAGCGCATTATGAAAGGGGTGAACCTGTTGGTGGCGACGCCGGGAAGGCTTCTCGATCACCTCCAGAATACGAACGGGTTTGTATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTCTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCTCGCTTATCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCACTGTGCTAAACGTTTTGTTGTTCTCTATTCATTCTTGAGGAGATACCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCCCGCACTACTACGTTCTTCAACTTTTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGGGGACTTGACATACCGGATGTGGACTGGATTGTGCAGTTTGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACATCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCCGCAAAGGTTCCTGTGAAAGAATATGCATTTGATCATAAGAAGCTTGCAAATGTACAATCTCAATTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAATGTTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACACTCCATGAAAGATATATTCAATGTTCACCGCCTTGATTTACAGGCTGTTGCTGCTTCATTCTGTTTCTCAAACCCACCGAAGGTGAACCTGAACATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTAGAAGGAAAAATTAATAAAGGAAATTTGTGA 1644 0.4483 MAEAEHNDPTSPEREDQTKSNKKKLRKRKRPQKTEQKQEEEKNDANIDSAQTQTEDEGENQEDTNVNNNVSSGIMSTESFSSLGLSEPTSKAIADMSFHRMTQIQAKAIPTLLTGNDVLGAARTGAGKTLAFLVPAVELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSLTLGLVIGGSGRKGEAERIMKGVNLLVATPGRLLDHLQNTNGFVYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVKDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVHCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQFDPPDEPKEYIHRVGRTSRGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDHKKLANVQSQLEKLVAGIYHLNVMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVEGKINKGNL 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01893 547 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 468 IPR001650 -
Gma06g01893 547 Pfam Helicase conserved C-terminal domain 314 418 IPR001650 -
Gma06g01893 547 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g01893 547 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 78 106 IPR014014 GO:0003724
Gma06g01893 547 PANTHER RNA HELICASE 27 525 - -
Gma06g01893 547 CDD SF2_C_DEAD 299 429 - -
Gma06g01893 547 SMART DUF4217_3 459 522 IPR025313 -
Gma06g01893 547 SMART helicmild6 338 419 IPR001650 -
Gma06g01893 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 284 IPR014001 -
Gma06g01893 547 Gene3D - 16 288 IPR027417 -
Gma06g01893 547 MobiDBLite consensus disorder prediction 32 46 - -
Gma06g01893 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 440 IPR027417 -
Gma06g01893 547 Gene3D - 295 542 IPR027417 -
Gma06g01893 547 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 230 238 IPR000629 -
Gma06g01893 547 MobiDBLite consensus disorder prediction 1 68 - -
Gma06g01893 547 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 27 525 - -
Gma06g01893 547 CDD DEADc_DDX18 89 286 IPR044773 GO:0003724|GO:0005524
Gma06g01893 547 SMART ultradead3 97 302 IPR014001 -
Gma06g01893 547 Pfam DEAD/DEAH box helicase 102 273 IPR011545 GO:0003676|GO:0005524
Gma06g01893 547 Pfam Domain of unknown function (DUF4217) 460 520 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01893 Gma-Chr6 20922253 20929934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01893 78 437 Eukaryotic Initiation Factors Gene Family AT3G13920 30.495 4.57e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01893 K13179 - gmx:100793807 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01893 06 20922253 20929934 Gma06g01893 06 20922253 20929934 ECH