Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01888 ATGGAAGGTAATGGTAGAAGGAGGAGGCGCCACTTCAGCAGAATCCATGCATTCTCTTGTGGAAAAGCTTCATTCAAAGGGGAGCATTCACTCATAGGCGGTCCTGGATTCTCAAGGATAGTGTACTGCAACGAAGCGGAACGCGGTGAGGGGAGTCTTGTGAGCTATGGTGACAATTATGTGAGTACTACTAAGTATACAGTGGCCACTTTCCTTCCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTCCTTATCTGTGCAATTCTGTCTTTTTTCCCGGTTTCTCCTTACTCGGCTGTCAGCAATGTTGTTCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTGTTGAGGATTGGAAGAGGAAAAAGCAGGATATTGATATGAATAATAGAAAGGTTAAAGTGCACCGTGGAGATGGTGTTTTTGACTATTCTAAATGGAAGGATTTGAAAGTCGGGGACATAGTAAAGGTTGAAAAGGATGAATTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGACGATGCAATTTGCTATGTAGAGACCATGAATCTTGATGGAGAAACAAATCTAAAAGTTAAACAATCACTTGAAGAAACTTCAAAGTTGCAAGAAGATTCAAGCTTTCAAAATTTCAAGGCTATTATCAAATGCGAAGATCCAAATGCAAATTTGTACTCGTTTGTAGGCAGTTTGGAGCTTGAAGATCAATTGTATCCTCTTTCACCTCTGCATCTACTGCTTAGGGACTCAAAGCTAAGGAACACCGAGTTCATCTACGGTGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAATTCAACAGAACCTCCATCCAAGAGAAGCACAGTTGAGAAGCGGATGGATAAGATCATCTACTTTCTGTTCTTAGTCTTATTTTTAATTTCTTTTATTGGTTCAATTTTCTTCGGGATTGCAACGAGGAAGGACCTTGAAAATGGAGTTATGAAGCGATGGTACCTCAGACCAGATGACACCACAATTTACTTTGATCCAAAGAAAGCACCAGTCGCAGCCATGCTGCACTTCCTGACTGCACTTATGTTGTATAGTTACTTGATTCCAATTTCTTTGTACGTTTCCATTGAAGTTGTGAAAGTTCTTCAAAGCATTTTCATCAACCAGGATTTGCACATGTATTATGAGGAAGCTGACCGGCCAGCACATGCTCGTACCTCGAATTTGAATGAAGAACTTGGCCAAGTTGATACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTCATCAAGTGTTCTATTGCTGGGATTGCGTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGGAGAGAAGGAGTACCTTTAAGTCAAGAGTTGACAGAAGATGGAAATGTTCCAAAGTCTTCCATTAAAGGTTTTAACTTTATGGATGAAAGGATCATGAAGGGAAATTGGATCAACGAACCTCACGCCGATGTAATCCAGAACTTTCTGCGGTTGTTGGCAGTATGCCATACTGCAATACCTGAAGTTGATGAAGAAATCGGTAAAGTTTCATATGAAGCTGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCAGAGAACTTGGTTTTGAGTTCTATGAAAGGACACAGACAAATATTTCACTGCATGAGTTCAATCCGAGATCAGGCCAAACAACAGAAAGGTCGTACAAACTTTTGAATATATTAGAGTTTAGTAGTACAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAAACTGCTACTATTTAGCAAAGGAGCAGACAGTGTCATGTTTGAACGACTTGCAAGGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTGATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCGTATCGGGAACTTGATGAAGAAGAGTACAATCTATTCAATGAAGAATTTATGGAGGCCAAAAACTTAGTGAGTGCAGATCGAGAGCAAATTGTGGAGGAAATATCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGAATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATATTGGGTTTGCTTGTAGTTTACTCAGACAAGGAATGAAGCAAATTATAATTAGTTCAGACACTCCAGAAACCAAATCACTGGAGAAAGTGGAGGACAAGTCTGCTGCTGCAGCGGCAGTTAAGGTAAGTGTTATTCATCAATTAACGAATGGAAAGGAATTACTTGCTGAATCTGATGAAAACTCTGAGGCATTAGCTCTTATCATTGATGGGAAGTCTCTCACTTATGCACTAGAAGATGATGTAAAGGACTTATTTCTTACACTTGCTGCTGGCTGTGCATCTGTCATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGATTGGTAAAGGTTAAAACTGGCAGTACAACTCTAGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGGATCGGTATCAGTGGTGTTGAAGGAATGCAGGCTGTAATGTCGAGTGATATCGCAATTGCCCAATTTCGGTTTCTAGAGCGTTTACTTCTTGTGCATGGGCATTGGTGTTACAGAAGAATCTCATCAATGATTTGCTACTTCTTTTACAAGAACATTGCCTTCGGCTTCACCCTCTTCTTCTACGAGATCTATGCGTCGTTCTCGGGGCAAGCTGCATACAATGATTGGTACCTCTCACTATATAACGTATTCTTCACTTCTCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTTTCTGCTAGACTATGCCACAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTCCTATTCAGCTGGAAACGGATCCTCGGTTGGGCTTTCAACGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAACGGAATGGAGAATCAAGCATTCCGTAAAGCCGGGGAAGTTGCTGATCTTGAAGTTCTTGGTGCCACCATGTACACTTGTGTTGTGTGGGTGGTGAATTCCCAAATGGCATTGTCCATTAGTTACTTCACTTACATACAACATTTATTCATATGGGGTGGCATTCTTTTCTGGTACATATTCCTCTTAGTGTATGGAACCATGGACCCTTCTCTATCAACCACTGCCTATAAGGTCTTGATTGAAGCTTGTGCACCAGCACCATCTTACTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTCGCCTACGCTTCGATCCAAATGCGGTTTTTCCCCACGTTCCATCAAATGATACAGTGGATACGAAATGATGGCCAAACAACTGATCCAGAATATGTTAATATTGTGAGACAAAGATCAATAAGACACACAACGGTTGGGTTCACGGCTCGGTTTGAAGCATCACATAGTTCAGGAGCATCCAAGAGTATTCAAGTCTGA 3573 0.4139 MEGNGRRRRRHFSRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNEAERGEGSLVSYGDNYVSTTKYTVATFLPKSLFEQFRRVANFYFLICAILSFFPVSPYSAVSNVVPLVVVVAATMGKEAVEDWKRKKQDIDMNNRKVKVHRGDGVFDYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKVKQSLEETSKLQEDSSFQNFKAIIKCEDPNANLYSFVGSLELEDQLYPLSPLHLLLRDSKLRNTEFIYGVVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFLVLFLISFIGSIFFGIATRKDLENGVMKRWYLRPDDTTIYFDPKKAPVAAMLHFLTALMLYSYLIPISLYVSIEVVKVLQSIFINQDLHMYYEEADRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGIAYGQGVTEVERALARREGVPLSQELTEDGNVPKSSIKGFNFMDERIMKGNWINEPHADVIQNFLRLLAVCHTAIPEVDEEIGKVSYEAESPDEAAFVVAARELGFEFYERTQTNISLHEFNPRSGQTTERSYKLLNILEFSSTRKRMSVIVRDEEGKLLLFSKGADSVMFERLARNGREFEEKTKQHIDEYADAGLRTLILAYRELDEEEYNLFNEEFMEAKNLVSADREQIVEEISEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKVEDKSAAAAAVKVSVIHQLTNGKELLAESDENSEALALIIDGKSLTYALEDDVKDLFLTLAAGCASVICCRSSPKQKALVTRLVKVKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWYLSLYNVFFTSLPVIALGVFDQDVSARLCHKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCINGMENQAFRKAGEVADLEVLGATMYTCVVWVVNSQMALSISYFTYIQHLFIWGGILFWYIFLLVYGTMDPSLSTTAYKVLIEACAPAPSYWLITLLVLVASLLPYFAYASIQMRFFPTFHQMIQWIRNDGQTTDPEYVNIVRQRSIRHTTVGFTARFEASHSSGASKSIQV 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01888 1190 SUPERFAMILY HAD-like 420 913 IPR036412 -
Gma06g01888 1190 CDD P-type_ATPase_APLT_Dnf-like 58 1018 - -
Gma06g01888 1190 Gene3D - 533 694 IPR023299 GO:0000166
Gma06g01888 1190 Gene3D - 695 898 IPR023214 -
Gma06g01888 1190 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Gma06g01888 1190 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Gma06g01888 1190 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Gma06g01888 1190 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1181 - -
Gma06g01888 1190 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 829 941 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma06g01888 1190 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1136 IPR023298 -
Gma06g01888 1190 SUPERFAMILY Calcium ATPase, transduction domain A 138 285 IPR008250 -
Gma06g01888 1190 Pfam Phospholipid-translocating ATPase N-terminal 41 106 IPR032631 -
Gma06g01888 1190 SFLD Haloacid Dehalogenase 407 909 - -
Gma06g01888 1190 SFLD p-type atpase 407 909 IPR044492 -
Gma06g01888 1190 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 4 1181 - -
Gma06g01888 1190 Gene3D - 108 287 - -
Gma06g01888 1190 Pfam E1-E2 ATPase 136 357 - -
Gma06g01888 1190 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1143 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gma06g01888 1190 Pfam Cation transport ATPase (P-type) 524 619 - -
Gma06g01888 1190 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Gma06g01888 1190 Pfam Phospholipid-translocating P-type ATPase C-terminal 886 1137 IPR032630 -
Gma06g01888 1190 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 473 696 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01888 Gma-Chr6 20810873 20816820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01888 11 1182 Primary Pumps ATPases AT1G68710 70.340 0.0 1800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01888 K01530 K14802 gmx:100777629 2270.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01888 06 20810873 20816820 Gma04g01361 04 26462549 26468750 ECH
Gma06g01888 06 20810873 20816820 Gma06g01888 06 20810873 20816820 ECH
Gma04g01614 04 43926859 43936792 Gma06g01888 06 20810873 20816820 GST