Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01859 ATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGAAACGAGCAAGAAAAATTGATGCCATGG 159 0.3836 MLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWRNEQEKLMPW 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01859 53 Gene3D - 1 51 IPR036638 GO:0046983
Gma06g01859 53 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 51 IPR036638 GO:0046983
Gma06g01859 53 Pfam Helix-loop-helix DNA-binding domain 2 30 IPR011598 GO:0046983
Gma06g01859 53 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 29 IPR011598 GO:0046983
Gma06g01859 53 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 53 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01859 Gma-Chr6 20070783 20071025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01859 1 53 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 69.811 9.72e-22 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01859 HLH 9.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01859 - - mtr:MTR_4g110040 110.923