Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma06g01850 | ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACGTTTTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCCCTCATAGTCTTCTCCACCAAAGGCAAACTCTTTGAGTACTCCAGCGATCCATGTGTGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCTTGTTGCAAGTGATCAACCACAAACTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGGAATTTTATGGGACAAGATTTGGAGGGCCTAAGTATCAAAGAGCTTCAAAATTTGGAACATCAACTTGATAGTGCTCTAAAACACATTAGATCACGGAAGAACCAAATCATGCATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGTCCTACAGGAACAAAATAACACTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAGCATGCACAAATGGAGCAGCGTGGTGATGAAATGGATCTTACTTCCTCTGCCCTAGTACCTCATCCATTGGAGACATCAAACATTAGAGAGTCCTCACAAATAAGGGGTGAAGGAGATAATGAAGGAACCCCAACTCCAACCCGAGCAAATGCCATTCTTCCATCTTGGATGCTTCGTCCTTCAAATGAATAG | 735 | 0.4259 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCVERILERYERYSYAERQLVASDQPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLEGLSIKELQNLEHQLDSALKHIRSRKNQIMHESISELHKKDKVLQEQNNTLAKKIKEKEKALAQHAQMEQRGDEMDLTSSALVPHPLETSNIRESSQIRGEGDNEGTPTPTRANAILPSWMLRPSNE | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma06g01850 | 244 | Coils | Coil | 161 | 188 | - | - | |
Gma06g01850 | 244 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 221 | - | - | |
Gma06g01850 | 244 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | MobiDBLite | consensus disorder prediction | 201 | 244 | - | - | |
Gma06g01850 | 244 | CDD | MADS_MEF2_like | 2 | 79 | IPR033896 | GO:0000977|GO:0045944 | |
Gma06g01850 | 244 | Coils | Coil | 88 | 108 | - | - | |
Gma06g01850 | 244 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | MobiDBLite | consensus disorder prediction | 201 | 231 | - | - | |
Gma06g01850 | 244 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gma06g01850 | 244 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG | 1 | 221 | - | - | |
Gma06g01850 | 244 | Pfam | K-box region | 83 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gma06g01850 | 244 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | SUPERFAMILY | SRF-like | 2 | 93 | IPR036879 | GO:0003677|GO:0046983 | |
Gma06g01850 | 244 | Coils | Coil | 125 | 145 | - | - | |
Gma06g01850 | 244 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma06g01850 | Gma-Chr6 | 19867125 | 19873576 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma06g01850 | 1 | 203 | MADS-box Gene Family | AT1G26310 | 63.285 | 3.66e-88 | 259 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Gma06g01850 | K-box | 3.5e-29 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma06g01850 | K09264 | - | gmx:100816836 | 470.314 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma06g01850 | 06 | 19867125 | 19873576 | Gma04g01535 | 04 | 41468899 | 41478604 | ECH | |
Gma06g01850 | 06 | 19867125 | 19873576 | Gma06g01850 | 06 | 19867125 | 19873576 | ECH |