Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01849 ATGGTTCCAACATTTTCCAAGGGAGCCCCCATTTTGTCTTTGTTGGAGTCGTCCACGCCGCCGAAGAGGGTGAGAGCTTTGGGGGCACATTCTCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGCTGCAAAGACTACCACAAGGGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTACAAAGTTATAGTGAATGGCATTGAACAAAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAATGCCTTGCAGGCCACAATGAGCGTCGAAGAAAACCACAAGTGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCTATATCCTGTGGAGTCTTGTCTTATGAGAAATACGAAGCGAGTGACTGGAGACCTATCAAAGCCTGAAGACAACACCAGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTATTACCAATGGACATCCTCAGTCAAGATCTTTGTTTCCTTCGTATAGTGAAAAACAAGTTCCATTGCTTCACAAAAATGGTGCTACGTCTGCCACAGGAAACGTCTTCTCTGAAAACAATAATCAATATCATCCACCTTCCCTTGGTGGCCAAAGTTCCGGGTCACAATCACTATTCCAGGACACCTCCTTAGGAAGCGAGGACTTCAATGTTTTCAACACAGAATCAGCGGTTCAAGGACTATCGTGA 711 0.4529 MVPTFSKGAPILSLLESSTPPKRVRALGAHSQTAYCQVYGCNKDLSGCKDYHKGHKVCEVHSKTYKVIVNGIEQRFHLLAEFDDGKRSCRKCLAGHNERRRKPQVGIHSGKAGRLLQLYPVESCLMRNTKRVTGDLSKPEDNTSFTFRPLSSIPITNGHPQSRSLFPSYSEKQVPLLHKNGATSATGNVFSENNNQYHPPSLGGQSSGSQSLFQDTSLGSEDFNVFNTESAVQGLS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01849 236 MobiDBLite consensus disorder prediction 183 214 - -
Gma06g01849 236 PANTHER 1 PROTEIN, PUTATIVE-RELATED 136 236 - -
Gma06g01849 236 PANTHER 1 PROTEIN, PUTATIVE-RELATED 3 121 - -
Gma06g01849 236 SUPERFAMILY SBT domain 34 107 IPR036893 GO:0003677|GO:0005634
Gma06g01849 236 Pfam SBP domain 36 102 IPR004333 GO:0003677
Gma06g01849 236 Gene3D - 27 90 IPR036893 GO:0003677|GO:0005634
Gma06g01849 236 ProSiteProfiles Zinc finger SBP-type profile. 33 103 IPR004333 GO:0003677
Gma06g01849 236 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 136 236 IPR044817 GO:0003677
Gma06g01849 236 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 121 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01849 Gma-Chr6 19754236 19756495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01849 20 117 SBP-box Gene Family AT1G69170 61.905 9.72e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma06g01849 SBP 4.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01849 - - gmx:100777766 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01849 06 19754236 19756495 Gma04g01540 04 41767950 41771888 ECH
Gma06g01849 06 19754236 19756495 Gma06g01849 06 19754236 19756495 ECH