Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01799 ATGGAACTCACCGAAGAACAACGACGCCAGGTAGAAGCAAACCGCGCCGCAGCGATCGCAAAACGCAAAGCATTCCTTGAATCTAGAGAAGAAGAACAACAACAACAAAAGAATCCCGAAGGAGAAAACAACAGCAACACCAACCCGAACCCATGGAACCTTTTCAAGTGCCAAAAGTTCCCCCTTTCCCCCAAACCCCAACCCCCAAAATTCCTCGCCAGACTCGAAATATGCTCCCCCGATTCCTTCTCCATAACGCCCCTTCCTCTCTCTTCCTTCCCTTTCCCTGGTCACCAACATTGCCTCAACACTCTAAGCTCCACTCTCTCACAACAACATGTGGTGCCTTCGCATTACACGCAGACTAGTGAGGGCGAGAAGGTGTGCGTGTTCAAGCTGGCGGAGTACCGCGCCGTGCTGAAGCAGCTAAAGGCCGCGGCGGCGGCGGAGGTGCTGCTGGTGGAGGAGATCCCCTGGGCGACGTTCAACGTCGTGGAGTGCCTCTCGCGTTCCTTCGCGGCTGGGCGGTGGGCGCCCGTGCGGCCGGAGCACCTGCCCGACGACGAGGTGGACCGCCTGATCGGGAGGCTTCCGAGGACGCTCTTGGAAAGGTTGCTGCCTTTCCAGCATGATGGGCTGAGATTCGCGTTGAGAAGAGGTGCAAGGTGCCTCATTGCCGATGATATGGGCCTCGGGAAGACGCTACAGGCTATTGCTATTGCAGGGTGTTTTGTGGAGGAAGGGTCTATACTTGTGGTTTGTCCGGCTGTGTTGCGGTATTCTTGGGCAGAGGAATTGGAGCGCTGGCTTCCTTCCTGCTTGCCGGCTGATGTCCATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAAAAAGAAGTCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAACGTGAATGGGCTCTCCTGATTATTGATGAATCTCATCATGTGCGATGTACAAAGAAAACAGAACCAGGAGAGATACAGGCTGTTCTCGATGTGGCTTCAAAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTCTGTCAAGGTTGCCTGGTTTGCTGGGGAAGACTAAATATGAGTTTGCAAAAACTTATTGCGATTTAAAATATATCAAAGGCATCCAAGGAAAATTTTTTGCGGATTATTCAAAGGGCGTGCGCTTGGAAGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGATGCTACAGTTACCTCCAAAACGCCGACAAATTATAAGACTGTTGATAAAAAGATCAGATATAGTTGCTGCAAAAACTGTAGTTGGGGTATTCAATATTGATGCCTCTGAAAGGGAAAGTGAAGACGTGCCTTTAGAAACTTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCGAAGCTTTCTGGTTTTCGTGAATGGCTTGCTCTCCATCCAATCATTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGACGGAGTACAGGTGTTTTTATGTGAGAAAGGGATAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGATAGACAATCAGCAGTAGTCTCATTTCGGTCATCACCAGAGGTTAAAATTGCAATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAACGGCACAAGATGTTGTGTTCTTGGAGCTACCAAAGTGCCCAACTATAATGCTCCAGGCTGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGCAAATATGATGCGATGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTGAACAGTGATAATTGTGAAGAGCAATCTGCACGCAGAGATGCAGTAGGTGAAACACAATTGGATAAGCAACCTTCTGCAGAAAATTCAAATGAATCCGAAGCAAATCGAGATGATAAATCTGATGAGACTTTTCTTAATAACTCAATTCAGAGTTCTAATATTATGGCTGAAAATATTTCCTGCCAAGATTTAGGCAAGGCTTCAGTACTGGATGGAACTTGTGATGTTGATGTTTTTGATGGCATGGAGAGATGTCCTGAAAAGAGTTTTGAAGATGGAGATCAAGAAATACGGTTGCAGGATTTGAAAAAAATTTCAACAACAGAAGCAGATGACAACCAGTCTGTTAATCTGGTTGAAGTCAATGGACATTGTTCTAATCAAGTTGATTTTCTTCGATTTGAGGTGAGCCCATACACTGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATAAAAGACCACAGCCACTTCATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTCTGTTGCTGATGATGAGAAACAGGCTCATGATGAGAAACAGAAAACAGAGTTTGTAACTGTGAAGGACAACCCCGCATATAGGCATGCTCTTATGGCTTTTGCAGAAGAGTGGAAGAACTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGATTATTAAATGGTGGAAGTAAAAGACGCAGGACGCCCTTAATGGAGATTAGCTATCCTTTACCATCAGATGCTGTTTGGAGAAAGGTATCTCTGCGAAGTGGCCTTGGTAAAAAGGAAAAAGAATACACTCAAGGCTGGAGTGTGACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCCTGGCTAACAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATGAGGAGTATCGAATGAGAACTAGCAACAGATTCCTCCGTGAGGAACTTTTCAAAATTGAACATGGAGTGTGCACAAATTGCCAATTCGACTGTCATAAGCTCGTTGAGGATATAAGACCTTTGTCATTGGAAAGGCGGCGTGAGTACATAGAGAAAGTAGCACCGAAAGTTGCTAAACGGAAGAAAATGTTTGAGAAGCTTGTCAATGAACCAACTGAAGGCAATGCATGGCATGCTGACCATATTGTTCCAGTATATGACGGAGGAGGTGAGTGCAAGCTGGAGAATCTGAGGACTCTCTGTGTAGCCTGCCATTATGATGTCACTGCTGCACAATGTGCTGAACGACGCATAGCCAAAGCAAATGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGGTATTAAGGGTGCTACTGGCACTAATACTAAGGACCATAAGCTTCTCGAGGAAGAAGGGAGTATGGTAGAAGATGAGCTTTTAGTTGAGGTTCCTGGCAGTGCCTATTCTTTAGCAGACAGCTAA 3501 0.4419 MELTEEQRRQVEANRAAAIAKRKAFLESREEEQQQQKNPEGENNSNTNPNPWNLFKCQKFPLSPKPQPPKFLARLEICSPDSFSITPLPLSSFPFPGHQHCLNTLSSTLSQQHVVPSHYTQTSEGEKVCVFKLAEYRAVLKQLKAAAAAEVLLVEEIPWATFNVVECLSRSFAAGRWAPVRPEHLPDDEVDRLIGRLPRTLLERLLPFQHDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFVEEGSILVVCPAVLRYSWAEELERWLPSCLPADVHLVFGHQDNPIYLKRSPRVVVISYTMLHRLRKSMLEREWALLIIDESHHVRCTKKTEPGEIQAVLDVASKVKRIILLSGTPSLSRLPGLLGKTKYEFAKTYCDLKYIKGIQGKFFADYSKGVRLEELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLIKRSDIVAAKTVVGVFNIDASERESEDVPLETLDEPDGKLSYQELGIAKLSGFREWLALHPIIAGSENASKMIIFAHHHKVLDGVQVFLCEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPKCPTIMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAMKEIEVEGISYLDSSLNSDNCEEQSARRDAVGETQLDKQPSAENSNESEANRDDKSDETFLNNSIQSSNIMAENISCQDLGKASVLDGTCDVDVFDGMERCPEKSFEDGDQEIRLQDLKKISTTEADDNQSVNLVEVNGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDKRPQPLHENFRPEELELLSSVADDEKQAHDEKQKTEFVTVKDNPAYRHALMAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRRTPLMEISYPLPSDAVWRKVSLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCLANNAKTPEFFEDLFCNLVCYEEYRMRTSNRFLREELFKIEHGVCTNCQFDCHKLVEDIRPLSLERRREYIEKVAPKVAKRKKMFEKLVNEPTEGNAWHADHIVPVYDGGGECKLENLRTLCVACHYDVTAAQCAERRIAKANARKQLKALMNSMKNGIKGATGTNTKDHKLLEEEGSMVEDELLVEVPGSAYSLADS 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01799 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 377 IPR014001 -
Gma06g01799 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 417 IPR027417 -
Gma06g01799 1166 Pfam Helicase conserved C-terminal domain 500 603 IPR001650 -
Gma06g01799 1166 Gene3D - 989 1124 - -
Gma06g01799 1166 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1121 - -
Gma06g01799 1166 Coils Coil 1 21 - -
Gma06g01799 1166 MobiDBLite consensus disorder prediction 1 37 - -
Gma06g01799 1166 SMART HNH_5 1047 1095 IPR003615 -
Gma06g01799 1166 CDD SF2_C_SNF 485 614 - -
Gma06g01799 1166 Gene3D - 384 708 IPR027417 -
Gma06g01799 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 656 IPR027417 -
Gma06g01799 1166 SMART helicmild6 520 603 IPR001650 -
Gma06g01799 1166 MobiDBLite consensus disorder prediction 1 50 - -
Gma06g01799 1166 MobiDBLite consensus disorder prediction 666 703 - -
Gma06g01799 1166 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1121 - -
Gma06g01799 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 649 IPR001650 -
Gma06g01799 1166 CDD HNHc 1058 1098 IPR003615 -
Gma06g01799 1166 SMART ultradead3 201 385 IPR014001 -
Gma06g01799 1166 Pfam HNH endonuclease 1064 1095 IPR002711 GO:0003676|GO:0004519
Gma06g01799 1166 Gene3D - 187 379 IPR038718 -
Gma06g01799 1166 Pfam SNF2-related domain 222 439 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01799 Gma-Chr6 18610446 18628498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01799 508 621 RAD5 or RAD16-like Gene Family AT1G11100 39.474 1.16e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma06g01799 SNF2_N 9.8e-24 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01799 K25861 - gmx:100788690 2254.94