Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01797 ATGTTTCCTGTCTCCATGTCTAATTATGACCGGATTTCAGAGCTGATATGGGAGAATGGCCAGCTATCCATCCATGGGCTTGGTGGGCTTCAACCTACTAACCCTACTCAGGAAAAGCCCATATCAAGTGGGGCCCACGACACATTGGAGTCTATCGTTCAACATGCCACGTTCCAACGTTATCAACCGTCAAAATTCACTAGGGAAGAAGGCCATGCCCCTACTAGTAATAGTAAAAACAACAACTCCATTGGTGCACCCTATTATGGTGGTGAGGTTCAAGGTGTGCAATCCTCGACGAGGAAAAGAACATGGTCCAATGCTAACAACAGCATGTTGGAAGAATGTGACATCCTTAGTGGTTGTGCTAGTGCTGGTGCTACCTTTTGTAGGGACAATGATACAACCATGATGACATGGGTCTCTCTTGATCAGTCTGGTCGTAGCTTAAAGACTATGGAGGAAGATTCTGCTTGTCACTGTGGATCGGAAATTCGAGACAACCAAGATGACAGAGACAGCAAAGCAGAAGTAGGCCAAAGCAACTCAAAAAGAAGAAGTCGAACTGCTGCCATTCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATGAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACAGATAAAGCTTCAATGTTAGATGAGGTGATAAACTACTTAAAGCAACTGCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGGTGCCTTTGGCCATGCAACAGCAGCTTCAGATGTCAATGCTAGCAAGAATGGGTGTTGCTGGGCTTGGCATGGGAATGGGCATGAACATGGCAGCAGCAGCCCAAACAGCAGGTGGCCCAATTAGGTCACTCCCCCAATTCATTCAACCAACAACAACTACAGTTTGTGCTCCACCACCTGCCACTGCCCCTGTGTTTGTTGCCCCTTCCTTCATGATGCCACCTTCCATGATCCAAGCACCTCCAAAGCCCCAACAATTACCTGCATCCTCAGCCTCCATTGCCTCAATTCATTTGCCTCATCCATATAGTGCTGCTGGTCTCACCCAACCAATTAACATGGATATCCTCAGCAACATGGCAGCACTTTATCAACAACAGATAAGTCAAAACAATCATCAGGCCCTGAGCAGCAGCATGCCCCAACCACACCATGAGCAAGGCCGTTGA 1209 0.4673 MFPVSMSNYDRISELIWENGQLSIHGLGGLQPTNPTQEKPISSGAHDTLESIVQHATFQRYQPSKFTREEGHAPTSNSKNNNSIGAPYYGGEVQGVQSSTRKRTWSNANNSMLEECDILSGCASAGATFCRDNDTTMMTWVSLDQSGRSLKTMEEDSACHCGSEIRDNQDDRDSKAEVGQSNSKRRSRTAAIHNQSERKRRDRINQKMKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMGVAGLGMGMGMNMAAAAQTAGGPIRSLPQFIQPTTTTVCAPPPATAPVFVAPSFMMPPSMIQAPPKPQQLPASSASIASIHLPHPYSAAGLTQPINMDILSNMAALYQQQISQNNHQALSSSMPQPHHEQGR 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01797 402 Pfam Helix-loop-helix DNA-binding domain 193 238 IPR011598 GO:0046983
Gma06g01797 402 MobiDBLite consensus disorder prediction 60 92 - -
Gma06g01797 402 Coils Coil 194 214 - -
Gma06g01797 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Gma06g01797 402 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 395 IPR031066 -
Gma06g01797 402 MobiDBLite consensus disorder prediction 162 182 - -
Gma06g01797 402 CDD bHLH_AtPIF_like 188 250 - -
Gma06g01797 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983
Gma06g01797 402 SMART finulus 194 243 IPR011598 GO:0046983
Gma06g01797 402 MobiDBLite consensus disorder prediction 162 202 - -
Gma06g01797 402 Gene3D - 182 248 IPR036638 GO:0046983
Gma06g01797 402 PANTHER TRANSCRIPTION FACTOR PIF7 9 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01797 Gma-Chr6 18563776 18569747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01797 12 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 37.643 4.79e-38 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01797 HLH 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01797 - - gmx:102667566 718.383