Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01781 ATGTCACTAGAAGGCAAGTTTTTGCACTCTGATGTTTGTACAAAAGAGGAAAAAAGCTATTCTACAATAATTGCCATATGCCAATGTGGGTTGGTAAATGGAATTGGCAAGTCAAAAATTGGGTTCATCATTGAAAATCATTGCAGAGGAAACAATTTAGCTCAAGAGATGGCTGGAAGCAGTGGGAAGCAAGAAAATACAATGCCAGTGAAGTTTGCAATCCAGAGGGAGTTAGAATATAGGAAAATTGTAGCAGCATTTCATTTGCGTCCGAATTCTAAATTCACTAAAGAGgttaaatcatcaaatgatgcttcctgtccaaagctattgccagGTGAGCTGGATGATATATACTGCAAAATTTGTCAAATATCTTGCTCAAGTCCATCCAATCTCAAGCAACACTTGAGAGGTCGGAAGCACGAGCAAATGTTGCAAAAGGGTGGAAGCAATAGTCAGATGCAATGGTGTGAAGTGTGTTGCATTCCGTGTATGAATGAAGATTTGCTCAAAATGCACTTTCAAGGCCAAAAGCACAAGGCTAAATTGCAGATGCTGGAAATCAGCAAGCAAGGTGTGGAGGCTCCAAATAAGCCAAAATGGTGTGCACTATGCAAATTATGGTGCAGTGATGAGTTTGCTTTCAGACTGCACCTTGGAGGACATGGTTCTCTTGTTTAG 684 0.3787 MSLEGKFLHSDVCTKEEKSYSTIIAICQCGLVNGIGKSKIGFIIENHCRGNNLAQEMAGSSGKQENTMPVKFAIQRELEYRKIVAAFHLRPNSKFTKEVKSSNDASCPKLLPGELDDIYCKICQISCSSPSNLKQHLRGRKHEQMLQKGGSNSQMQWCEVCCIPCMNEDLLKMHFQGQKHKAKLQMLEISKQGVEAPNKPKWCALCKLWCSDEFAFRLHLGGHGSLV 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01781 227 PANTHER ZINC FINGER RNA-BINDING PROTEIN 108 222 - -
Gma06g01781 227 PANTHER ZINC FINGER RNA-BINDING PROTEIN-LIKE 108 222 - -
Gma06g01781 227 Gene3D Classic Zinc Finger 91 148 - -
Gma06g01781 227 SMART ZnF_U1_5 198 227 IPR003604 GO:0003676|GO:0008270
Gma06g01781 227 SMART ZnF_U1_5 153 187 IPR003604 GO:0003676|GO:0008270
Gma06g01781 227 SMART ZnF_U1_5 115 149 IPR003604 GO:0003676|GO:0008270
Gma06g01781 227 SUPERFAMILY beta-beta-alpha zinc fingers 154 188 IPR036236 -
Gma06g01781 227 SMART c2h2final6 118 142 IPR013087 -
Gma06g01781 227 SMART c2h2final6 156 180 IPR013087 -
Gma06g01781 227 SMART c2h2final6 201 223 IPR013087 -
Gma06g01781 227 Gene3D Classic Zinc Finger 149 196 - -
Gma06g01781 227 ProSitePatterns Zinc finger C2H2 type domain signature. 120 142 IPR013087 -
Gma06g01781 227 SUPERFAMILY beta-beta-alpha zinc fingers 90 147 IPR036236 -
Gma06g01781 227 Pfam Zinc-finger of C2H2 type 119 142 - -
Gma06g01781 227 Pfam Zinc-finger of C2H2 type 202 223 - -
Gma06g01781 227 Pfam Zinc-finger of C2H2 type 157 180 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g01781 zf-met 6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01781 - - gmx:102666094 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01781 06 18430514 18432921 Gma06g01781 06 18430514 18432921 ECH