Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01771 ATGTCTTCTTCTCTTTCCCCTTGTCCCTCTTCCCTCGACCAAATCCTTCGCGACGTCGACGACTACGTTCTGGAAAATGGATCAGAAGATTTGTCATGGGACACACTTCATTATGTGTACGAGCTTGTGAAGAATGGGAATGCGGCATTTCGAGAGAACAGAATGCAAGAGGCAATCAACTTATACTCGAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCGAATATTTCATGCGCAGAACATCATCATCTTCAGAACGTAGGCCATTGAGTGGGCTTGAACCCACAACAATTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGCAAAATCATATCTTTTAAAGGCCAGTGCTCTTTTACTGTTAGAGAAATATGAAAAAGCCCGGGATGTTATTCTTTCAGGTCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGGACATCCAGAACGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGCCGATCGTGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGTAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACATTGAAGAACATTATACAAAAGAACTTCCCAGAGGAATATGCTGAAAGGAAGCAAGAGCATGACGGTTTAATCAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAGAGGTTTGCACTCAATATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATAACAGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGTATCATCCGTTCTAGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAAGATATTATGCCACCAGAAGGAACAAGTGAAAGAGAGACTTTACAACAACAAACATATAATGCAGCTGAAGATGCTCGATCGTGGATAGCAAGAGCTAAAGAAGCAGCAAAACATGATCCAAGAAAACTTGAGAGACTCGCCAGTGTTGAAGTAATGATGCCCTCACCAAAAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACTCTCTCCAATCGGAGGCCTGCGGAAAGATTGGATCTCCTACGCATAAGAGACACTGCTGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAACTCTTCATCTCCCTCTCTTCATTTTTTTCTCTCACTTTTCTCCCTCCCCCTACCCCATCGTTCGACCTTCCCTCTCCCTTCCGGCATCAGCAGCTCGTGACCCTCCCCCTCCTCCTCCCTTTCCCCTTCGTGCGACCTTCCTCCCTCCCCCTCCCCTCTCACACGACCTTCTTCTTCCTTCCGGCACCGCCGGTCCGTAACCTTCCCCCTCCCCCTCCCTCTCCCCCTTGTGCAACCTTCATCTGA 1704 0.4478 MSSSLSPCPSSLDQILRDVDDYVLENGSEDLSWDTLHYVYELVKNGNAAFRENRMQEAINLYSRANNIKSGDPIILSNRSAAYIRISEYFMRRTSSSSERRPLSGLEPTTIAELGLKDAEKLVELQSNSAKSYLLKASALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGHPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDGLINAGVDLLPLFVMDVVIPCQRFALNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSRDQDGYRVAEVEWIQDIMPPEGTSERETLQQQTYNAAEDARSWIARAKEAAKHDPRKLERLASVEVMMPSPKDPERFSFWLATLSNRRPAERLDLLRIRDTAERIRRGLIFLRQEEQGCRIQLFISLSSFFSLTFLPPPTPSFDLPSPFRHQQLVTLPLLLPFPFVRPSSLPLPSHTTFFFLPAPPVRNLPPPPPSPPCATFI 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01771 567 Gene3D Tetratricopeptide repeat domain 38 187 IPR011990 GO:0005515
Gma06g01771 567 SUPERFAMILY TPR-like 39 166 IPR011990 GO:0005515
Gma06g01771 567 SMART ring_2 197 234 IPR001841 -
Gma06g01771 567 Gene3D - 279 380 IPR046336 -
Gma06g01771 567 PANTHER RING FINGER PROTEIN 127 16 480 - -
Gma06g01771 567 SMART lon_5 280 478 IPR003111 -
Gma06g01771 567 SUPERFAMILY RING/U-box 191 260 - -
Gma06g01771 567 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Gma06g01771 567 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Gma06g01771 567 SUPERFAMILY PUA domain-like 281 476 IPR015947 -
Gma06g01771 567 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 16 480 - -
Gma06g01771 567 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Gma06g01771 567 ProSiteProfiles Lon N-terminal domain profile. 278 478 IPR003111 -
Gma06g01771 567 Gene3D - 416 478 - -
Gma06g01771 567 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 477 IPR003111 -
Gma06g01771 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 275 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01771 Gma-Chr6 18117866 18137034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01771 195 267 C3H Transcription Factor Family AT2G42030 34.667 1.72e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01771 - - gmx:100802277 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01771 06 18117866 18137034 Gma06g01771 06 18117866 18137034 ECH