Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01752 ATGGTGCTTTTGGGACTTCTCTTGGTGGGATTTCTCTCTCAGCTGGGTTCATCAGTTTCAGCTTCTGGTTATGGTTGGATGGATGCTCATGCAACCTTCTATGGAGGGGGTGATGCCTCTGGCACCATGGGTGGAGCATGTGGATATGGGAACTTGTACAGCCAGGGCTATGGAACAAACACTGCTGCTTTGAGCACAGCCTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAGGTGTGTTAATGACCAAAGGTGGTGCCTTCCACGCTCAGTTATTGTAACTGCAACCAATTTCTGTCCCCCAAACAATGCACTCCCTAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCACTTCGACCTTTCCCAACCTATTTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTACCCGTGGCTTACCGAAGGGTCCCTTGCCTAAAGAGAGGGGGAATCAGATTCACCATCAACGGCCACTCATACTTCAACCTAGTCCTAATTTCCAACGTTGGAGGTGTTGGTGATGTTCATGCAGTTTCCATCAAAGGCTCAAGAACAAATTGGCAACCAATGACCAGAAATTGGGGCCAGAACTGGCAAAGCAACGCCTATCTCAATGGACAAAGCCTCTCCTTCAAGGTTACGGCTAGCGACGGGCGCACCGTGGTCTCTAATAATGTTGCACCCTCAAGTTGGTCCTTTGGCCAAACCTTCAATGGCCATCAATTCATTTAA 750 0.4813 MVLLGLLLVGFLSQLGSSVSASGYGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCVNDQRWCLPRSVIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQQIAQYKAGIVPVAYRRVPCLKRGGIRFTINGHSYFNLVLISNVGGVGDVHAVSIKGSRTNWQPMTRNWGQNWQSNAYLNGQSLSFKVTASDGRTVVSNNVAPSSWSFGQTFNGHQFI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01752 249 Gene3D - 12 151 IPR036908 -
Gma06g01752 249 PANTHER EXPANSIN 8 248 - -
Gma06g01752 249 SMART dpbb_1 61 146 IPR007112 -
Gma06g01752 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Gma06g01752 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Gma06g01752 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Gma06g01752 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Gma06g01752 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Gma06g01752 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gma06g01752 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gma06g01752 249 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Gma06g01752 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Gma06g01752 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Gma06g01752 249 Gene3D - 156 248 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01752 Gma-Chr6 17836215 17838699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01752 1 248 Expansin Gene Family AT2G03090 80.242 7.45e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01752 - K20628 gmx:100799075 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01752 06 17836215 17838699 Gma04g01631 04 44363370 44366477 ECH
Gma19g00216 19 2784944 2787319 Gma06g01752 06 17836215 17838699 ECH
Gma20g00327 20 4783736 4785890 Gma06g01752 06 17836215 17838699 ECH
Gma02g00998 02 10683705 10686005 Gma06g01752 06 17836215 17838699 ECH
Gma01g00461 01 5991245 5993454 Gma06g01752 06 17836215 17838699 ECH
Gma06g01752 06 17836215 17838699 Gma06g01752 06 17836215 17838699 ECH