Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01750 ATGCAGGAGAATAAGGATCCAGCAATTAAGCTCTTCGGCCAGAAGATTGCCTTCGCCGGAGAAGTCGACCCTCCGGCCATTTCCGCCGGCGAAATTGACTCGCCGCCGGCGATGGATGTCGACAAGGACGAAGAAGACGACTTTGGTGACTCAGAGACTGAAGATGAGAAAGACAAGGATCCCCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTCCTCCAAATGCTGCAGACTCAAAGAAGACCCCAGAGGGTATTCAGAACCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAAACCAACAAGTCAGAGAACAACAACAACAACAAAACACTGAAGAAGCCGGACAAAATTCTGCCATGTCCGCGCTGCAACAGCATGGACACAAAGTTCTGCTACTACAACAACTACAACGTCAACCAACCACGCTATTTCTGCAAGGCGTGCCAAAGGTACTGGACTGCGGGAGGAACCATGCGAAACGTGCCGGTGGGAGCGGGGAGAAGAAAGAACAAGAACTCGGCTTCGCACTACCGCCACATCACAATCTCTGAAGCACTTCAAGCAGCAAGAATTGATGCTGCCCCCAACGGGACTCATCATCTTTTGAAACCAAATGGGAGAGTCCTCAGCTTCGGATTAGAATTAGACCCTCCAATTTGTGATTCCATGGCCTCAGTCCTTAACCTCACTGCAGAGAAAAAGGGTACTCTTAACAACAATTCAAGAAACAACAACAACAACAACAACAACGGTGATGATTGCTCAAGTGCATCTTCAATTACTGTTTCCAATGAAGAAAACGGGAAAAGCACGTCTCAAGAATCAATTGTGGTGCCAAACAGCAACGGTTTCATCCACCATGTTCCATGCATTTCAACTCTTCCTTGGCCTTATCCTTTTCCCTCAGGAGCACCTGCTATGTGCCCTCCAGGGTTTCCAATGTCATTCTACCCTGCAGCATTTTGGAACATTCCATGGTTTCCCTCACAACACTCACACCATTCTTCTGCTCCAACTCCTAGGTCTCCGAATTCTCCGACACTAGGAAAACACTCCCGCGATGACGACGCGACAAAACAATACCATTTGCAAGAAGAACAACCACCCTCAAGGCAGAGAAACGGTTCTGTTTTGGTCCCCAAAACACTGAGAATTGATGACCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTTTGGGCATCAAGAATGAGTGTGTCACTGGTGGAGGCATGTTCAAGGGATTCCAATCAAAGAAAGAAGAGAAAGACCATGTTGTTGAAGCCTCTCCTGTGTTGAGAGCTAACCCTGCGGCTTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA 1374 0.4738 MQENKDPAIKLFGQKIAFAGEVDPPAISAGEIDSPPAMDVDKDEEDDFGDSETEDEKDKDPRAEKVSEKTKEADPPPNAADSKKTPEGIQNPNTPSIDEESAKSKTNKSENNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAAPNGTHHLLKPNGRVLSFGLELDPPICDSMASVLNLTAEKKGTLNNNSRNNNNNNNNGDDCSSASSITVSNEENGKSTSQESIVVPNSNGFIHHVPCISTLPWPYPFPSGAPAMCPPGFPMSFYPAAFWNIPWFPSQHSHHSSAPTPRSPNSPTLGKHSRDDDATKQYHLQEEQPPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVTGGGMFKGFQSKKEEKDHVVEASPVLRANPAALSRSLNFHENS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01750 457 MobiDBLite consensus disorder prediction 84 100 - -
Gma06g01750 457 PANTHER CYCLIC DOF FACTOR 1 1 456 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 55 78 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 337 389 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 355 369 - -
Gma06g01750 457 ProSiteProfiles Zinc finger Dof-type profile. 125 179 IPR003851 GO:0003677|GO:0006355
Gma06g01750 457 Pfam Dof domain, zinc finger 122 179 IPR003851 GO:0003677|GO:0006355
Gma06g01750 457 PANTHER CYCLIC DOF FACTOR 2 1 456 IPR045174 GO:0003700|GO:0006355
Gma06g01750 457 MobiDBLite consensus disorder prediction 370 384 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 337 354 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 242 282 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 38 54 - -
Gma06g01750 457 MobiDBLite consensus disorder prediction 22 124 - -
Gma06g01750 457 ProSitePatterns Zinc finger Dof-type signature. 127 163 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01750 Gma-Chr6 17801036 17804323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01750 1 455 C2C2-Dof Transcription Factor Family AT3G47500 48.861 3.22e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Gma06g01750 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01750 - - gmx:100798021 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01750 06 17801036 17804323 Gma04g01634 04 44438739 44441671 ECH
Gma19g00205 19 2685498 2688716 Gma06g01750 06 17801036 17804323 ECH
Gma20g00335 20 4942519 4945787 Gma06g01750 06 17801036 17804323 ECH
Gma01g00454 01 5866252 5870143 Gma06g01750 06 17801036 17804323 ECH
Gma06g01750 06 17801036 17804323 Gma06g01750 06 17801036 17804323 ECH