Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01712 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTCTCTAAGTTGCAACAGCTTCTTCCAGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGGTGACCTAAGCGAGCGTTTATCTGAGCTCCTGGATACAACTGACACGGCTCAAGCTGCAATAATTAGAAATTTACTGATGCAATAG 279 0.4444 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVGDLSERLSELLDTTDTAQAAIIRNLLMQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01712 92 Coils Coil 57 77 - -
Gma06g01712 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Gma06g01712 92 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Gma06g01712 92 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g01712 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 76 IPR036638 GO:0046983
Gma06g01712 92 CDD bHLH_AtPRE_like 17 77 - -
Gma06g01712 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Gma06g01712 92 Gene3D - 18 88 IPR036638 GO:0046983
Gma06g01712 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01712 Gma-Chr6 17282371 17284398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01712 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 70.968 1.21e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01712 HLH 6.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01712 - - gmx:100787967 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01712 06 17282371 17284398 Gma04g01671 04 45393776 45395428 ECH
Gma19g00188 19 2306892 2310132 Gma06g01712 06 17282371 17284398 ECH
Gma02g00181 02 1682233 1683493 Gma06g01712 06 17282371 17284398 ECH
Gma01g00411 01 5058729 5063583 Gma06g01712 06 17282371 17284398 ECH
Gma08g02807 08 44180771 44182345 Gma06g01712 06 17282371 17284398 ECH
Gma18g01105 18 15718302 15718903 Gma06g01712 06 17282371 17284398 ECH
Gma06g01712 06 17282371 17284398 Gma06g01712 06 17282371 17284398 ECH