Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01702 ATGGAAACTAGCAAGTTCAGTTTGCTATTCTTTTATGTAATTTGTCTTGCTATATTTCCTACCCTTAACGCTAACATAGGTCACTTCGACCATGAGAAAAACCGCAAGAGGCTGGCAGATTGTGCCCTAGGCTTTGGCCACGGCACAATCGGGGGAAAAGATGGAAAAATTTACGTGGTGAAAGACTCTTCCAACAATGACCTCGTAAACCCTAAACCAGGGACATTGAGACATGCTGCAATTCAAAAAGAGCCACTATGGATAATTTTTTATCGAAGCATGAACATTAAACTTCATGCGGAGCTTATGCTAACGGATAACAAGACCATAGATGCACGTGGTGCCAATGTGAACATTAGCGAGGGTGCCCAAATAACGTTGCAATATGTGAGAAACATCATCATTCACGGGCTGCACATTCATGACATTAAGAAATGTAGTGGTGGTCTCATAAGAGACTCCATGGATCACTACGGAGTCCGCGCCATGAGTGATGGCGATGCCATTTCGGTGTTTGGATCCACGCATATTTGGATAGATCATGTTTTGTTATTTGGTGTGAATGATAGCTACTCAGGAGATAAAATCATGCAAGTGAGTTTGGCTTTCAACCATTTCGGGAAAGGATTGATTCAGAGGATGCCAAGGTGTAGATGGGGCTTCTTTCATATTGTTAACAAAGAATACACCCATTGGCTAATGTACGCCATCGTTGGTAGCCAACAACCCACCATCATCAGCCAGGGCAACCGGTTTGTGGCCTCACCAAACCCAAATGCAAAAGAAGTGACAAAAAAGGACTATGCACCCGAAAGTGTGTGGAAGAATTGGAATCAGAGATCAGAGGGTGATTTAATGGTGAATGGAGCCTTCTTTGTTCAATCTGGGAAAAGCATTGCCAAACATCCCAAGGCAGAAATCACAGCAAAACCAGGGAAAGCCGTAGCGAGTCTCACTCGCTTTGCGGGTCCTTTGAAATGTGAACTAAACAAGCCGTGCTGA 1002 0.4391 METSKFSLLFFYVICLAIFPTLNANIGHFDHEKNRKRLADCALGFGHGTIGGKDGKIYVVKDSSNNDLVNPKPGTLRHAAIQKEPLWIIFYRSMNIKLHAELMLTDNKTIDARGANVNISEGAQITLQYVRNIIIHGLHIHDIKKCSGGLIRDSMDHYGVRAMSDGDAISVFGSTHIWIDHVLLFGVNDSYSGDKIMQVSLAFNHFGKGLIQRMPRCRWGFFHIVNKEYTHWLMYAIVGSQQPTIISQGNRFVASPNPNAKEVTKKDYAPESVWKNWNQRSEGDLMVNGAFFVQSGKSIAKHPKAEITAKPGKAVASLTRFAGPLKCELNKPC 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01702 333 SMART amb_all 93 258 IPR002022 -
Gma06g01702 333 PANTHER PECTATE LYASE 18-RELATED 27 183 IPR045032 GO:0030570
Gma06g01702 333 PANTHER PECTATE LYASE 18-RELATED 181 333 IPR045032 GO:0030570
Gma06g01702 333 Gene3D - 24 183 IPR012334 -
Gma06g01702 333 Gene3D - 184 326 IPR012334 -
Gma06g01702 333 PRINTS Pollen allergen Amb family signature 41 58 IPR018082 -
Gma06g01702 333 PRINTS Pollen allergen Amb family signature 65 90 IPR018082 -
Gma06g01702 333 PRINTS Pollen allergen Amb family signature 101 117 IPR018082 -
Gma06g01702 333 PRINTS Pollen allergen Amb family signature 165 186 IPR018082 -
Gma06g01702 333 PANTHER PECTATE LYASE 27 183 - -
Gma06g01702 333 PANTHER PECTATE LYASE 181 333 - -
Gma06g01702 333 SUPERFAMILY Pectin lyase-like 29 324 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01702 Gma-Chr6 17121629 17124119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01702 15 333 Polysaccharide Lyase AT1G14420 53.760 3.70e-127 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01702 K01728 - gmx:100801864 551.977