Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01682 ATGGATCCTCCTCTCATCACTGACTCCACATTCTCCCCCGCTTACTCTCTCGCCGAGATTTGGCCCGGAATGCCCCATTTCCCcCCTCCCTTCCCCCACCCCTCCTCCGCCGATCACTCCACCCTCACCGACCTCACCGCCACCCCCCGCAAGAGAAAGGACTGCTCCTCCTCCTCCTCCTCCGCCTCCGCCGCCGACGAGGACGACTGCTCCAAGGTCCTCTCCTCCACCACCACCGCCACTGCCAACCTCTCCAATAATGATTCTGGTAGCAATAAACAGATGAAGTTAGGAGGGTCCAGTGTTGAAAACGATGGTTTCAAAGCTGAGGCAGAAGCGAGTTCTGCGGGTGGTAACAAGTCAAGTGAGCAAAGCAATAAACCTTGTGAGGCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGCCAAGCAACCGATAGCCACAGTCTGGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGATTTGGTGCCAGGGTGTAACAAGGTAATTGGTAAAGCACTTGTTCTAGATGAGATAATCAATTACATCCAGTCACTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAATGAACATGAACCCTACTATTGATGGGTTTCCTTCAAAAGATGTTGGTACTCAGCCATTTGACATTGCTGGAATGGTATTTGGATCACAGGCAGCAAGGGGGTATGCTCAGGGATCATCACCTCCTGGATGGCTGCATATGCAGATAGGAGGTGGTTTCGAGAGAACAACATAA 810 0.5037 MDPPLITDSTFSPAYSLAEIWPGMPHFPPPFPHPSSADHSTLTDLTATPRKRKDCSSSSSSASAADEDDCSKVLSSTTTATANLSNNDSGSNKQMKLGGSSVENDGFKAEAEASSAGGNKSSEQSNKPCEAPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNMNPTIDGFPSKDVGTQPFDIAGMVFGSQAARGYAQGSSPPGWLHMQIGGGFERTT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01682 269 MobiDBLite consensus disorder prediction 26 132 - -
Gma06g01682 269 MobiDBLite consensus disorder prediction 115 129 - -
Gma06g01682 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 215 IPR036638 GO:0046983
Gma06g01682 269 Coils Coil 192 212 - -
Gma06g01682 269 MobiDBLite consensus disorder prediction 52 99 - -
Gma06g01682 269 Gene3D - 142 219 IPR036638 GO:0046983
Gma06g01682 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 269 IPR024097 GO:0006355
Gma06g01682 269 PANTHER BNAC05G07950D PROTEIN 1 269 - -
Gma06g01682 269 SMART finulus 151 201 IPR011598 GO:0046983
Gma06g01682 269 CDD bHLH_AtBPE_like 135 220 - -
Gma06g01682 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Gma06g01682 269 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01682 Gma-Chr6 16812206 16816275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01682 1 269 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.498 5.35e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01682 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01682 - - gmx:100777819 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01682 06 16812206 16816275 Gma04g01712 04 46325946 46330051 ECH
Gma06g01682 06 16812206 16816275 Gma06g01682 06 16812206 16816275 ECH
Gma04g01712 04 46325946 46330051 Gma06g01682 06 16812206 16816275 GST