Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01677 ATGCCTCTATCCTCCTCTTCCTCCTCCGCCGTAGACTCCGCCGTCTCCGGCGAGATCATGCTCTTTGGCGTTAGAGTCGTGGTGGACTCCATGCGGAAGAGTGTGAGTATGAACAACCTCTCGCAGTACGAGCTTCCTCGCGACGCTGCCAACGCCAAAGACGACGCCGCAGGATACGCCTCCGCCGATGATGCAGCTCCGATCAACTCCGACAAGAACCGCGACCGCAAGCGAGGGATTCCATGGACTGAGGAAGAGCACAAGCTATTCTTGGTGGGGTTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTATGTCAAAACGAGGACGCCAACACAGGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCCGCACCAACCTCAATCGCCGTCGCCGGAGATCCAGCCTCTTTGACATCACCACCGACTCGGTCTCTACAACCCCTATGGAGGAAGGAGTACAGATCCAGCATCAAGATAATGTGTCTCTCTTTCATCCAGTGTACCCTGTAACCCCTGAAGGAAGCAACATGAATGGATTTCCAAAGATGTCCATGTATCCAAAGGATGTTGGTTCTGGAGTCATGTCAGTTCAAGCTGGGAATCCAATGGAAACACTCACTTTGGGACAAGGAAATGTGGAACAGAATGGGCCAAGTACTAAGCTAGTTTGTACAACCCCTATTGTTCCAGATCATAGAGGCTCCACAGTGTCTGATATCACTGCAAGTTTGAGTTCCATTGATCCACCAACACTGTCTCTGGGGTTATCTTTGTCATCCAGTCCAAGACAAACATCATCATCAATACATGCAGCTTTACATGCACTGCCATACTTCAACAATCAAGATAGCATCATAAGTGCTGCTTGA 885 0.5028 MPLSSSSSSAVDSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYELPRDAANAKDDAAGYASADDAAPINSDKNRDRKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTDSVSTTPMEEGVQIQHQDNVSLFHPVYPVTPEGSNMNGFPKMSMYPKDVGSGVMSVQAGNPMETLTLGQGNVEQNGPSTKLVCTTPIVPDHRGSTVSDITASLSSIDPPTLSLGLSLSSSPRQTSSSIHAALHALPYFNNQDSIISAA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01677 294 Gene3D - 80 132 - -
Gma06g01677 294 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Gma06g01677 294 SUPERFAMILY Homeodomain-like 76 130 IPR009057 -
Gma06g01677 294 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Gma06g01677 294 CDD SANT 81 126 IPR001005 -
Gma06g01677 294 MobiDBLite consensus disorder prediction 54 79 - -
Gma06g01677 294 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 15 294 - -
Gma06g01677 294 PANTHER KIN2 15 294 - -
Gma06g01677 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
Gma06g01677 294 SMART sant 78 128 IPR001005 -
Gma06g01677 294 ProSiteProfiles SANT domain profile. 82 130 IPR017884 -
Gma06g01677 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01677 Gma-Chr6 16777822 16780733 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gma06g01677 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01677 - - gmx:778056 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01717 04 46379308 46381978 Gma06g01677 06 16777822 16780733 GST
Gma17g00889 17 7549453 7551625 Gma06g01677 06 16777822 16780733 PCT
Gma05g00311 05 2852623 2854864 Gma06g01677 06 16777822 16780733 PCT
Gma06g01677 06 16777822 16780733 Gma17g00889 17 7549453 7551625 PCT
Gma06g01677 06 16777822 16780733 Gma05g00311 05 2852623 2854864 PCT