Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01668 ATGACTTCTTTGTCTACCCATCACACCTATAGCCGAAAGCAAAAATCTCTCGGCCTCCTCTGCACCAATTTTCTGAGTTTGTACAACAAAGAAGGTGTGCGCCTGGTCGGTCTCGATGACGCAGCTTCGCGGTTAGGTGTAGAAAGACGTCGGATCTACGACATCGTTAATGTTTTAGAGAGTGTCGGTGTGCTAACCAGAAAAGCTAAGAATCAGTATACTTGGAAAGGATTTTGTGCAATTCCTGCTGCCTTACAAGAACTTAAGGATGAAGGTTTGAAGGAGAATCCTGGATCATTTGATGACTCCAATGACAATGCAAAAGTGTCTGATGATGAGGAGGAGGAAGAAGAAACATTTCCTAATATTAACATTGGGAGTCAGAGTGAGAAGGAAAATCCTGATTACACTGCTACTGTCAAATCCTCCAAGAATGAAAACAGAAGGGAAAAATCTCTGGCATTGCTTACTCAGAATTTTGTCAAGCTTTTTGTCTGCTCTAATTTTGAAATGATCTCCCTTGACGAAGCTGCAAAGTTGTTGCTTGGAAATGCCAACAATAGAACAAAAGTCAGACGTCTATATGATATTGCGAATGTGTTATCCTCCATGAACCTAATCGAGAAGACCCATACAACAAACACAAGAAAACCAGCATTCAGGTGGTTGGGTGTGAGGGGAAAAACATGGGGTGGATCAGTTGACTTGGCTCAAAATTCAAATGTCAAAGAGTCACGGAAAAGGATGTTTGGAACTGACATTGGAAACATAAGTTTTAAAAGGAACAAAGTTGATTTGTCCATGGATGGCCAGAATTCTAAAATGCAAAATCAACACGAAAATATTAGTCCACGAGCTCAGTTAGAGAAAATCATCATAAAAAAAGATGCTAAGCAGACTTCAGAGAGCTATCAGTTTGGCCCTTTTGCTCCAGCTTATGTGCCCAAAGTTGGAACCTCTGAAAATAATAGTGTGAAAAAGGTGCATGACTGGGACAGCCTCGCACAGGAGCATCGTCCTCAATATCAAAACCAAGGTTAG 1041 0.4111 MTSLSTHHTYSRKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRLGVERRRIYDIVNVLESVGVLTRKAKNQYTWKGFCAIPAALQELKDEGLKENPGSFDDSNDNAKVSDDEEEEEETFPNINIGSQSEKENPDYTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNANNRTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWGGSVDLAQNSNVKESRKRMFGTDIGNISFKRNKVDLSMDGQNSKMQNQHENISPRAQLEKIIIKKDAKQTSESYQFGPFAPAYVPKVGTSENNSVKKVHDWDSLAQEHRPQYQNQG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01668 346 MobiDBLite consensus disorder prediction 121 141 - -
Gma06g01668 346 SUPERFAMILY "Winged helix" DNA-binding domain 150 225 IPR036390 -
Gma06g01668 346 Pfam E2F/DP family winged-helix DNA-binding domain 150 224 IPR003316 GO:0005667|GO:0006355
Gma06g01668 346 Pfam E2F/DP family winged-helix DNA-binding domain 13 77 IPR003316 GO:0005667|GO:0006355
Gma06g01668 346 MobiDBLite consensus disorder prediction 93 148 - -
Gma06g01668 346 SUPERFAMILY "Winged helix" DNA-binding domain 11 75 IPR036390 -
Gma06g01668 346 Gene3D - 7 79 IPR036388 -
Gma06g01668 346 Gene3D - 142 226 IPR036388 -
Gma06g01668 346 PANTHER TRANSCRIPTION FACTOR E2F 6 345 IPR015633 GO:0000978|GO:0006357
Gma06g01668 346 SMART E2F_TDP_2 12 77 IPR003316 GO:0005667|GO:0006355
Gma06g01668 346 SMART E2F_TDP_2 148 224 IPR003316 GO:0005667|GO:0006355
Gma06g01668 346 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 6 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01668 Gma-Chr6 16643943 16647065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01668 3 345 E2F-DP Transcription Factor Family AT3G48160 54.237 1.26e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma06g01668 E2F_TDP 5.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01668 K09391 - gmx:100818090 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01668 06 16643943 16647065 Gma06g01668 06 16643943 16647065 ECH
Gma04g01726 04 46605407 46610896 Gma06g01668 06 16643943 16647065 GST
Gma17g00880 17 7461294 7465427 Gma06g01668 06 16643943 16647065 PCT
Gma05g00320 05 2955233 2958390 Gma06g01668 06 16643943 16647065 PCT
Gma06g01668 06 16643943 16647065 Gma17g00880 17 7461294 7465427 PCT
Gma06g01668 06 16643943 16647065 Gma05g00320 05 2955233 2958390 PCT