Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01659 ATGGGTGGCAACGGCAAACACAGGTGGAAATTCAGCTTCCACCGTTCCTCCACCCATCCTCCCAAGGAATTCACCTGCCCCATTTCCGGCTCACTAATGTCCGACCCTGTCGTCGTAGCTTCGGGCCAAACCTTCGAACGACTCGCCGTTCAACTCTGCAAAGACCTCAACTTCTCCCCCAAGCTAGACGACGGCACCCGACCCGACTTCTCAACCCTAATCCCCAACCTCGCCATCAAAACGACAATCCTCCACTGGTGCGACAACGCCCGCACCCAACACCCGCGCCCTCCCGATTACGCCTCCCTCCAGCGCCTCGTCTTAGAACAAAAAGAAAATGACCGCGTTAGGGTTTCCGAAATGGAGCTTCTCAACGCCGTCGCCGACCTCCCTCCCGTCATCTTCTCCCACGCCGCCACCGAGTTAGGCCCCCGAGTCAACCACTTCAACTCGGGATCCTCCTCCGAGCAGGAATCCGTCATCATCCCCTCGAGTCCGGGAACTCCGTTACCGTTAACTATTCGCCCGACGTGCTTCTCCTCTTCCTCCTCCTCCTCCTGCGAGATCGAAATCGAAAACTCTAACACCCCGGCGTCGGAGGAAGAAGAAGGACTATTAAAGAAATTGAAGAGTAACGAGGTGTTTGAGCAAGAAGAAGGCGTAATCGCGCTGAGAAAGATCACGAGGAACAAAGAGGATGCTAGGGTTTCGCTCTGCACGCCGCGGGTGTTACTAGCGCTGCGTGGTTTGATCGCCTCGCGATACGGCGTTGTCCAGGTCAACGCGGTGGCGTCTCTGGTCAACCTTTCGCTAGAGAAGCAGAACAAGGTGAAGATTGTTAGGTCAGGGTTTGTTCCGTTCTTGATCGATGTTTTGAAGGGGGGACTGGGTGAGTCGCAGGAGCACGCTGCGGGCGCGCTTTTTAGCTTGGCTTTGGACGATGACAACAAAATGGCGATCGGCGTTCTCGGCGCGTTGCATCCGTTGATGCACGCGCTTCGTGCCGAGTCCGAGCGGACCCGGCACGACTCGGCGCTCGCACTGTATCATTTGTCACTTGTACAGAGCAATAGAATGAAACTGGTGAAGCTCGGCGTGGTCCCCACACTTCTCTCGATGGTGGTGGCGGGGAATCTGGCGAGCCGGGTGCTGCTGATTCTCTGCAACCTCGCCGTGTGCACGGAGGGGCGCACGGCGATGCTGGACGCCAACGCGGTGGAGATTTTAGTATCACTGTTGAGAGGGAACGAGTTGGACTCGGAGGCGACTCGGGAGAATTGCGTGGCGGCGCTTTACGCGCTGAGTCATAGAAGCTTGAGGTTCAAGGGTTTGGCTAAGGAAGCGAGAGTGGCGGAGGTTTTGAAGGAGATTGAGGAAACGGGTACGGAGAGGGCGAGGGAGAAGGCGAGAAAGGTGTTGCACATGTTGAGAACTGTGGGAGATGGAGATGGTGATGAGATTGACGAGTTTTACGACTCGGCCGGGTTGACTCGGAATCGGTACCGAGCTGGTGCTGCCAGGAATAGCGACAACCTCGTCAACACGACCACGTTTTAG 1557 0.5658 MGGNGKHRWKFSFHRSSTHPPKEFTCPISGSLMSDPVVVASGQTFERLAVQLCKDLNFSPKLDDGTRPDFSTLIPNLAIKTTILHWCDNARTQHPRPPDYASLQRLVLEQKENDRVRVSEMELLNAVADLPPVIFSHAATELGPRVNHFNSGSSSEQESVIIPSSPGTPLPLTIRPTCFSSSSSSSCEIEIENSNTPASEEEEGLLKKLKSNEVFEQEEGVIALRKITRNKEDARVSLCTPRVLLALRGLIASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPFLIDVLKGGLGESQEHAAGALFSLALDDDNKMAIGVLGALHPLMHALRAESERTRHDSALALYHLSLVQSNRMKLVKLGVVPTLLSMVVAGNLASRVLLILCNLAVCTEGRTAMLDANAVEILVSLLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARVAEVLKEIEETGTERAREKARKVLHMLRTVGDGDGDEIDEFYDSAGLTRNRYRAGAARNSDNLVNTTTF 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01659 518 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 93 IPR013083 -
Gma06g01659 518 PANTHER U BOX DOMAIN-CONTAINING 1 508 - -
Gma06g01659 518 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 508 - -
Gma06g01659 518 SUPERFAMILY ARM repeat 205 476 IPR016024 -
Gma06g01659 518 SUPERFAMILY RING/U-box 14 95 - -
Gma06g01659 518 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g01659 518 Gene3D - 189 491 IPR011989 -
Gma06g01659 518 SMART Ubox_2 23 86 IPR003613 GO:0004842|GO:0016567
Gma06g01659 518 Pfam U-box domain 21 89 IPR003613 GO:0004842|GO:0016567
Gma06g01659 518 CDD RING-Ubox 26 72 - -
Gma06g01659 518 ProSiteProfiles U-box domain profile. 19 93 IPR003613 GO:0004842|GO:0016567
Gma06g01659 518 SMART arm_5 354 392 IPR000225 GO:0005515
Gma06g01659 518 SMART arm_5 272 312 IPR000225 GO:0005515
Gma06g01659 518 SMART arm_5 313 353 IPR000225 GO:0005515
Gma06g01659 518 SMART arm_5 393 436 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01659 Gma-Chr6 16501442 16503548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01659 1 518 U-box Gene Family AT5G65200 56.272 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01659 - - gmx:100815075 995.342
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01659 06 16501442 16503548 Gma04g01736 04 46762159 46764268 ECH
Gma06g01659 06 16501442 16503548 Gma06g01659 06 16501442 16503548 ECH
Gma04g01736 04 46762159 46764268 Gma06g01659 06 16501442 16503548 GST