Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01655 ATGATGGCATCATTTGCAGGGACTACTCAGAAGTGCAAAGCATGTGAGAAGACTGTGTATTTGGTGGATCAGCTCACTGCTGACAACAAGATCTATCACAAATCATGTTTCAGATGCTACCACTGCAAGGGTACCCTTAAGTTGAGTAACTATTGTTCCTTTGAGGGTGTGTTATACTGTAAGCCTCATTTTGATCAACTCTTTAAGAAGACTGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTACTGAtCAGGTCCAAACCAATAGCAAGGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTTTACCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACTCATGGGGGGTGTGTAATTAGCCCCTCAAATTACGTTGCCCATGAACATCGTCTTTATTGTAGGCACCATCACACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGCCAACTTGACAAGCAAGAAAATGATGAAGGGGTGACTGAGAACACAATAACTGAGTAA 579 0.4111 MMASFAGTTQKCKACEKTVYLVDQLTADNKIYHKSCFRCYHCKGTLKLSNYCSFEGVLYCKPHFDQLFKKTGSLDKSFEGIPRTARLERSTDQVQTNSKVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENDEGVTENTITE 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01655 192 CDD LIM2_SF3 111 171 - -
Gma06g01655 192 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Gma06g01655 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 38 78 - -
Gma06g01655 192 Gene3D Cysteine Rich Protein 6 76 - -
Gma06g01655 192 Gene3D Cysteine Rich Protein 105 175 - -
Gma06g01655 192 PANTHER OS06G0237300 PROTEIN 2 186 IPR045268 GO:0051015
Gma06g01655 192 Pfam LIM domain 111 166 IPR001781 -
Gma06g01655 192 Pfam LIM domain 12 66 IPR001781 -
Gma06g01655 192 ProSitePatterns LIM zinc-binding domain signature. 12 46 IPR001781 -
Gma06g01655 192 CDD LIM1_SF3 8 70 - -
Gma06g01655 192 ProSiteProfiles LIM domain profile. 10 70 IPR001781 -
Gma06g01655 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 103 136 - -
Gma06g01655 192 SMART lim_4 110 162 IPR001781 -
Gma06g01655 192 SMART lim_4 11 63 IPR001781 -
Gma06g01655 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 175 - -
Gma06g01655 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 37 - -
Gma06g01655 192 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01655 Gma-Chr6 16463023 16466670 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma06g01655 LIM 2.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01655 K09377 - gmx:100500501 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01655 06 16463023 16466670 Gma06g01655 06 16463023 16466670 ECH
Gma04g01739 04 46791096 46800934 Gma06g01655 06 16463023 16466670 GST
Gma17g00869 17 7374928 7378825 Gma06g01655 06 16463023 16466670 PCT
Gma05g00329 05 3046641 3060600 Gma06g01655 06 16463023 16466670 PCT
Gma06g01655 06 16463023 16466670 Gma17g00869 17 7374928 7378825 PCT
Gma06g01655 06 16463023 16466670 Gma05g00329 05 3046641 3060600 PCT