Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01635 ATGGCCATCAGAGGCGTCAATTTCAAATGGTTCGATGGCCTTTTCTTGTCCATGCTCGCCACCAGCATAGCTATTGTGGCAATTAATTGGAAGCGGTACCAATCTTGTACTCACCCTTTGCACATATGGACTGTGGTTGACTATGCTGCTGTTTTCACTTTCCGGCTTTTGATGTTTGTTGATAACGGGCTTGCTTCGGGAATGGGCTTAGATTTTGGGTGGCCGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTACTTTCAATTCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAGTTGGTACCCTGTGGTTCAGCAACACTAAAATCTGCTTGCCTGGAGGGGGTCAGAAATGGGGCTTCCTTATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGTATTGCTTGCTTGGCAATGGGGAAGTGGTTGAAACGAAGACAAGCACGTATGTTAGGCGCTCAAGAGGGTATCCCGGTATCCGCATTTGGGGTTCTAATTGAAATGATCCGAGTACCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGAGCATGGCCCAAGATGCTGCATATCATCCTGGACTTTACCTAACTCCAGCCCAGAGAGAAGCGGTTGAAGCTTTAATTCAGGAACTCTCATCGTTCAGGTTGACTGCTGTTCCTACTAATTGCAGTGAATGCCTCATCTGCTTAGAAGAGTTCCATGTAGGAAATCAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGGCTTAATGTGAATTGTCCTCGGTGCCGTTGCTCAGTATTTCCTAACCTTGATCTTAGTGCTCTGTCCAATATCCGTTCTGAGTCTGAACAATCTTCTGCCACTGCTGTGACAAGCAGAGATATGACAGGCCAAACTTCTAGTCAGAGTTACCTTCTGAGATTACAGGGGCATCTCCACCCAGTTTGTGTTGACATTGCTGGGCCAGCTGGTGAGACAGATAATGCTTTGGAAAATGCTGAAAATGGTGTTGTACCTGTTGTGACTCTAAATATGTCAACTACAGATCGGGCCGCTTCTGGTGAACACATGCCTGTTACTCTTTCCTCTTCACAAAATTAG 1137 0.46 MAIRGVNFKWFDGLFLSMLATSIAIVAINWKRYQSCTHPLHIWTVVDYAAVFTFRLLMFVDNGLASGMGLDFGWPQRYARFCGRVVVLSILALLLYPFLWAWTIVGTLWFSNTKICLPGGGQKWGFLIWLLFSYCGLLCIACLAMGKWLKRRQARMLGAQEGIPVSAFGVLIEMIRVPDWAFEAAGQETRSMAQDAAYHPGLYLTPAQREAVEALIQELSSFRLTAVPTNCSECLICLEEFHVGNQVRGLPCAHNFHVECIDEWLRLNVNCPRCRCSVFPNLDLSALSNIRSESEQSSATAVTSRDMTGQTSSQSYLLRLQGHLHPVCVDIAGPAGETDNALENAENGVVPVVTLNMSTTDRAASGEHMPVTLSSSQN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01635 378 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Gma06g01635 378 SMART ring_2 234 274 IPR001841 -
Gma06g01635 378 SUPERFAMILY RING/U-box 233 282 - -
Gma06g01635 378 Pfam Ring finger domain 233 275 IPR001841 -
Gma06g01635 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Gma06g01635 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 - -
Gma06g01635 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 360 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01635 Gma-Chr6 16156225 16161946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01635 58 362 C3H Transcription Factor Family AT3G47990 67.742 5.31e-148 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01635 K16284 - gmx:100808817 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01635 06 16156225 16161946 Gma06g01635 06 16156225 16161946 ECH
Gma04g01767 04 47207866 47213101 Gma06g01635 06 16156225 16161946 GST
Gma17g00847 17 7179772 7185469 Gma06g01635 06 16156225 16161946 PCT
Gma05g00351 05 3280403 3285778 Gma06g01635 06 16156225 16161946 PCT
Gma06g01635 06 16156225 16161946 Gma17g00847 17 7179772 7185469 PCT
Gma06g01635 06 16156225 16161946 Gma05g00351 05 3280403 3285778 PCT