LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma06g01618	ATGGGAAAGTTTAGTTCAAGTTACAGTACTTTTGATTATGGGGTTCTACTTGTCTTTCTTCTGTTATCACATTTCTCTTTTCAACTTGGATTGTGTGGCTCCATAGTGAAGTATGTGGGGGTTGGTGAATCAGAGGATGTGCAGGCCTTCTACTATTCAATTGAGTCAGAGAACAATCCCAAGGAGGATCCTCTCATGCTTTGGCTTACTGTGGCCCTGGTTGCTCATGGTCCCCTTGCATTTAATCATGAGGACTATAATGGGAGCCTTCCCACTTTGATCTTGAGGCCACAATCATGGACAAAGgttagtagcattatatttgtaggcttgcctgtttcctccggcttcacttatgccagaatagagcatgcggcacaacgaagtgattggatgttagttcatcaagtccatcaatttcttaggaagtggttgattgatcatcaacagattttgtcaaatgaagtttacattggtggcgattcatactctggcatttctattccagtaattgttcaagaaatttcacaagGAAATGAAAAAGGGGTCAAACCATGGATAAATCTCCAGGGATACCTGCTGGGGAATCCATCAACAACTCGAAGGGAAGATAACTATAAAATTCCCTTTGCTCATGGAATGACACTTATTTCTGATGAGCTATACGAGTCACTACAAAAAAATTGTAAAGGAGAGTACATAAATGTAGACACGAGAAATGCATTGTGTTCTAGAGATATGGAGTCATTCCATGAGGCTACGTCAGGACATGATTTGGCCTATATTTTGGACTCATCTTGTGAGTGGGATGATAGTGAAACATCTTCTAGGAGATCTTTGGAAGAGTTTCCTAAATGCTCATCTCAAATTGCCACCCTTAAGCTGTCGGGGAAGTATAGGAAAATGGTATCGATGTACCTTCCATATATACCTAACAAGGAGGATATCCCAATCAGCTTTGAGTATCATGTCAATCTTAGTAGAAAAGGCTATCGTTCACTGATATACAGTGGCGATCATGGCCTGAATGTTCTTTTCTTGGGAACTGAAGCATGGATAAGATCTTTAAACTACTCCATTGTGGATGATTGGAGGCCATGGCTTACAAATGGCCAAGTTGCAGGGTATTCCTCTAACTCTAGTTATATAGCAACCGGGCTTAATTTATTTAAAAGCTTATCAAATTATGGTGGAGGCCACCCAGCTCCGGAGTTCAAGCCTGAAGAATGCTTTGCCATGTATAGTAGGTGGATATCTAACAAGGTTTTGTAG	1272	0.3388	MGKFSSSYSTFDYGVLLVFLLLSHFSFQLGLCGSIVKYVGVGESEDVQAFYYSIESENNPKEDPLMLWLTVALVAHGPLAFNHEDYNGSLPTLILRPQSWTKVSSIIFVGLPVSSGFTYARIEHAAQRSDWMLVHQVHQFLRKWLIDHQQILSNEVYIGGDSYSGISIPVIVQEISQGNEKGVKPWINLQGYLLGNPSTTRREDNYKIPFAHGMTLISDELYESLQKNCKGEYINVDTRNALCSRDMESFHEATSGHDLAYILDSSCEWDDSETSSRRSLEEFPKCSSQIATLKLSGKYRKMVSMYLPYIPNKEDIPISFEYHVNLSRKGYRSLIYSGDHGLNVLFLGTEAWIRSLNYSIVDDWRPWLTNGQVAGYSSNSSYIATGLNLFKSLSNYGGGHPAPEFKPEECFAMYSRWISNKVL	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma06g01618	423	PRINTS	Carboxypeptidase C serine protease (S10) family signature	96	108	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	PRINTS	Carboxypeptidase C serine protease (S10) family signature	144	169	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	PRINTS	Carboxypeptidase C serine protease (S10) family signature	109	119	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	PRINTS	Carboxypeptidase C serine protease (S10) family signature	390	403	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	Pfam	Serine carboxypeptidase	38	420	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	Gene3D	alpha/beta hydrolase	30	269	IPR029058	-
	Gma06g01618	423	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	12	290	IPR001563	GO:0004185\|GO:0006508
	Gma06g01618	423	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	311	422	-	-
	Gma06g01618	423	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	12	290	-	-
	Gma06g01618	423	SUPERFAMILY	alpha/beta-Hydrolases	38	421	IPR029058	-
	Gma06g01618	423	Gene3D	-	275	422	-	-
	Gma06g01618	423	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	311	422	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma06g01618	Gma-Chr6	15891600	15896470	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma06g01618	314	423	Calmodulin-binding Proteins	AT2G22960	55.455	4.71e-32	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma06g01618	K16296		-	gmx:100781037	738.413