Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01617 ATGCAGAGCGCGGCTTTCACTTTCTCTCCCTCTCTCCCTCTCCGCAACCCTTCCCCTAACTCTTGGAGGAGACCCTCTCTTTCTCTCCGTCTCCACGCCAAACACAGCAACAACAACAACAACAGTAACAGCACCGAAGGCGTTAACTCCAATGGCGTCTCTTCCACTTCCTTCACTCGCCGATCTTGGACTCTTCTTCCTTCTTCTTCTTTCAAATTCAGGCCTCTTCCTTCTTCACCTCCTCGCGCCGCCGAAAACGCCGTTCCCGAAAGCGCAGCAGCACCCGTCGAAAACCCGCTCTTCAAAACTCTCGAACTCGGCGCCTTGTTTGGCTTATGGTACCTcttcaacatctacttcaacatctacAACAAACAGGTGTTGAAGGCGTTTCATTATCCGGTAACTGTGACTGTTGTTCAGTTTGCCGTTGGGACTGTGCTAGTGGCATTTATGTGGGGTTTGAATCTCTATAAGAGGCCGAAACTCAGTGGTGCTATGCTTGGAGCGATTTTGCCGCTGGCTGCAGTGCATACTTTGGGGAACCTTTTCACTAATATGAGTCTTGGGAAGGTGGCCGTGTCTTTCACTCACACTATCAAAGCCATGGAGCCTTTCTTTTCAGTCATCCTTTCTGCCATGTTCCTTGGAGAGTTTCCTACACCGTGGGTGGTTGGTTCCCTTGTGCCTATTGTTGGTGGAGTTGCACTGGCGTCTGTTACCGAGGCCTCTTTCAATTGGGCTGGATTTTGGAGTGCAATGGCATCTAATGTGACAAATCAATCTCGTAATGTTCTTAGCAAAAAGGCCATGGTTAAGAAAGAGGATTCTATGGACAACATTACTCTCTTCTCTATAATAACTGTAATGTCCTTCTTCTTGTTAGCACCTGTGGCTATCTTCATGGAGGGTGTCAAATTTACCCCTGCTTACTTGCAATCTGCTGGGGTGAATGTTAGACAACTTTACATCAGATCTCTTCTTGCTGCTCTCTGTTTCCATGCGTATCAACAAGTTTCGTATATGATATTGCAAAGGGTATCACCTGTTACCCACTCTGTGGGTAATTGTGTGAAGCGGGTTGTGGTCATTGTGAGCTCTGTCATCTTCTTCCAAACACCTGTCTCACCTGTGAATGCTTTTGGGACTGCTATAGCTCTTGCTGGAGTTTTCCTCTATTCAAGGGTGAAGCGTATTAAGGCAAAGCCAAAAACAGCTTAA 1221 0.4636 MQSAAFTFSPSLPLRNPSPNSWRRPSLSLRLHAKHSNNNNNSNSTEGVNSNGVSSTSFTRRSWTLLPSSSFKFRPLPSSPPRAAENAVPESAAAPVENPLFKTLELGALFGLWYLFNIYFNIYNKQVLKAFHYPVTVTVVQFAVGTVLVAFMWGLNLYKRPKLSGAMLGAILPLAAVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEFPTPWVVGSLVPIVGGVALASVTEASFNWAGFWSAMASNVTNQSRNVLSKKAMVKKEDSMDNITLFSIITVMSFFLLAPVAIFMEGVKFTPAYLQSAGVNVRQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPVNAFGTAIALAGVFLYSRVKRIKAKPKTA 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01617 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 293 397 - -
Gma06g01617 406 Pfam Triose-phosphate Transporter family 105 394 IPR004853 -
Gma06g01617 406 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 102 379 - -
Gma06g01617 406 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 404 IPR004696 GO:0016021|GO:0022857|GO:0055085
Gma06g01617 406 MobiDBLite consensus disorder prediction 33 55 - -
Gma06g01617 406 SUPERFAMILY Multidrug resistance efflux transporter EmrE 148 240 - -
Gma06g01617 406 PANTHER SOLUTE CARRIER FAMILY 35 102 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01617 Gma-Chr6 15882815 15887707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01617 1 406 Antiporters AT5G33320 71.531 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01617 K15283 - gmx:100804563 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01617 06 15882815 15887707 Gma04g01786 04 47805045 47808796 ECH
Gma06g01617 06 15882815 15887707 Gma06g01617 06 15882815 15887707 ECH
Gma04g01786 04 47805045 47808796 Gma06g01617 06 15882815 15887707 GST
Gma17g00831 17 7016950 7021585 Gma06g01617 06 15882815 15887707 PCT
Gma06g01617 06 15882815 15887707 Gma17g00831 17 7016950 7021585 PCT