Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01597 ATGGCATCATCAAGCTCCTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAGTGCCTTCCGGGGTGCATCTTTGCACCTTACTTCCCACCAGAGGAGCCTCAAAAATTCGCAAACGTGCACAAGATCTTCGGTGCTAGCAACGTGACAAAGCTTCTCAATGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAACTCTCTTGCCTATGAAGCCGAGGCACGTGTTAGAGACCCCGTTTATGGCTGCGTAGGTGCCATCTCATTCCTCCAGAGACAAGTCCAAAGGCTCCAGAAGGAGCTTGATTCCGCCAATGCTGATCTCCTACGCTATGCCTGCAATGACATGCCTCCACCCTCTCTTTCTGTGCCACCACAAATGCCCCAAAGGTCTTTTATTGCAAGGTTTGGTAATGAATCAGCAAGTGGAGGAGGGTTCTATAGGCCTTCTCCTACAACCACCACCACCACTTACTCTTTCCCTTATTCTCTTCCTTGGACTGATTCTGAGGATATCAATGATAGAGGAGGAGAAGGAGGAGGTAACTTGTGA 558 0.4928 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRYACNDMPPPSLSVPPQMPQRSFIARFGNESASGGGFYRPSPTTTTTTYSFPYSLPWTDSEDINDRGGEGGGNL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01597 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 184 - -
Gma06g01597 185 PANTHER ELONGATED PETIOLULE 1 1 184 - -
Gma06g01597 185 Coils Coil 89 116 - -
Gma06g01597 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Gma06g01597 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01597 Gma-Chr6 15548334 15548891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01597 1 185 AS2 family AT5G63090 61.386 2.04e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma06g01597 LOB 5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01597 - - gmx:100799774 374.015