Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01579 ATGGCAGTTTCTTCAGCAACAGCTTCCTCCAAACTCATACTATTCCCCCATGCATCATCATCCTCTTCCCTTAATTCCACACCCTTCCGCTCCTCCACCACCAACACCCACAAACTAACCCCTCTCTCCTCCTCCTTCCTCCACCCCACCACCGTCCTCCGCCGCACCCCTTCTTCCACCACCACCCCGCGTCGCACCTTCACCGTCCGCGCCGCCCGCGGCAAATTCGAGCGCAAGAAGCCCCACGTGAACATCGGCACCATCGGCCACGTCGACCACGGCAAGACCACCCTTACCGCCGCCCTGACCATGGCTCTTGCCGCCCTAGGCAACAGCGCCCCCAAAAAATACGACGAGATCGACGCCGCCCCGGAGGAACGCGCCCGAGGCATCACCATCAACACCGCCACCGTGGAGTACGAGACCGAGAACCGCCACTACGCCCACGTGGACTGCCCCGGCCACGCTGACTACGTGAAAAACATGATCACCGGCGCAGCCCAAATGGACGGCGCCATATTAGTCGTCTCCGGCGCCGACGGCCCCATGCCCCAAACCAAAGAACACATCCTCTTAGCGAAACAAGTCGGTGTCCCCAACATGGTCGTGTTCTTAAACAAGCAAGACCAAGTCGACGACGAAGAGCTTCTCCAACTAGTGGAGCTCGAAGTCCGCGACCTTCTGAGCTCCTACGAATTCCCCGGTGACGATACCCCCATTGTCTCGGGCTCCGCGCTCTTAGCCCTAGAAGCACTCATGGCCAACCCTGCAATCAAACGCGGCGACAACGAGTGGGTCGACAAGATTTTCCAACTCATGGACGAGGTCGACAACTACATTCCCATCCCCCAGCGCCAGACCGACCTCCCCTTCCTCCTCGCCGTCGAAGACGTCTTTTCCATCACCGGCCGTGGCACCGTCGCCACTGGCCGTGTAGAGCGTGGCACCATCAAAGTAGGGGAAACTGTTGACCTTGTAGGTTTGAGAGAAACAAGGAACACAACCGTCACAGGTGTAGAAATGTTCCAGAAGATTCTAGACGAAGCCCTGGCTGGAGACAACGTGGGGCTGTTGCTTAGAGGGGTTCAGAAGACTGACATTCAGAGGGGAATGGTGTTGGCTAAACCAGGCACGATTACGCCGCACACCAAGTTCTCAGCGATTGTTTATGTTTTGAAGAAAGAAGAAGGTGGTAGGCATTCACCTTTCTTTGCAGGGTATAGGCCTCAGTTTTACATGAGGACCACCGATGTGACTGGGAAGGTTACGTCTATCATGAATGATAAGGATGAGGAGTCCACGATGGTGCTGCCCGGTGACCGTGTCAAGATGGTGGTGGAGCTTATTGTTCCTGTGGCTTGCGAACAGGGAATGAGGTTTGCTATTAGGGAAGGTGGGAAGACCGTTGGTGCTGGTGTTATCCAATCCATTATTGAGTGA 1440 0.5618 MAVSSATASSKLILFPHASSSSSLNSTPFRSSTTNTHKLTPLSSSFLHPTTVLRRTPSSTTTPRRTFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRDLLSSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIFQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01579 479 Pfam Elongation factor Tu C-terminal domain 378 477 IPR004160 -
Gma06g01579 479 PANTHER ELONGATION FACTOR TU 34 479 - -
Gma06g01579 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 299 IPR027417 -
Gma06g01579 479 TIGRFAM small_GTP: small GTP-binding protein domain 83 215 IPR005225 GO:0005525
Gma06g01579 479 CDD EF_Tu 81 283 IPR041709 -
Gma06g01579 479 PRINTS GTP-binding elongation factor signature 84 97 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 PRINTS GTP-binding elongation factor signature 128 136 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 PRINTS GTP-binding elongation factor signature 148 158 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 PRINTS GTP-binding elongation factor signature 164 175 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 378 478 IPR009001 -
Gma06g01579 479 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 121 136 IPR031157 -
Gma06g01579 479 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 80 284 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 SUPERFAMILY Translation proteins 285 381 IPR009000 -
Gma06g01579 479 MobiDBLite consensus disorder prediction 18 43 - -
Gma06g01579 479 CDD EFTU_II 291 377 IPR033720 -
Gma06g01579 479 Gene3D - 72 283 IPR027417 -
Gma06g01579 479 CDD EFTU_III 380 474 - -
Gma06g01579 479 Gene3D Translation factors 286 414 - -
Gma06g01579 479 Gene3D Translation factors 418 478 - -
Gma06g01579 479 Pfam Elongation factor Tu domain 2 305 373 IPR004161 GO:0005525
Gma06g01579 479 Pfam Elongation factor Tu GTP binding domain 80 281 IPR000795 GO:0003924|GO:0005525
Gma06g01579 479 Hamap Elongation factor Tu [tuf]. 71 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gma06g01579 479 PANTHER ELONGATION FACTOR TU-RELATED 34 479 - -
Gma06g01579 479 TIGRFAM EF-Tu: translation elongation factor Tu 72 479 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01579 Gma-Chr6 15337159 15338598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01579 78 477 Eukaryotic Initiation Factors Gene Family AT5G60390 29.778 9.81e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01579 K02358 - gmx:100793431 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01579 06 15337159 15338598 Gma06g01579 06 15337159 15338598 ECH
Gma04g01830 04 48406021 48408115 Gma06g01579 06 15337159 15338598 GST
Gma17g01162 17 10128149 10129970 Gma06g01579 06 15337159 15338598 PCT
Gma05g00400 05 3763139 3764973 Gma06g01579 06 15337159 15338598 PCT
Gma06g01579 06 15337159 15338598 Gma17g01162 17 10128149 10129970 PCT
Gma06g01579 06 15337159 15338598 Gma05g00400 05 3763139 3764973 PCT