Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01564 ATGTCTATCACTTCCCTCACCATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCCACACCAAAACCAAACCCTCTCTCTTTACACCCCCCTCCAAACCCCTCACACTCCAATTTTCATGCCTCAACTCCTCCGTCTCTCTCTCCCTCGCCGCACCAACTCACCGTTCTCCCCTTGTAACTTTCGTGGCCCAAACTTCCGATTGGGCTCAACAAGAAGAAGAACAGAGCCTCGCTGAAACCGAAGCGGGCCTGGAAAGTTGGGAGCCCAACGGCGAAGACGCCGGCGATGAGAGCTTCGTCGAACCGCCGGAAGAGGCCAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTTTTCGAACAGGCCGGAACCGTTGAAATCGCTGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGGTTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAAAGCGCTGTGGAGAAATTCAACCGCTATGATATCGATGGAAGACTGCTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCCGAACGCCCACCACCTCGTCGTTCCTTTGAGTCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGACAATACCCGGCTGAAGCAAATTTTCAGTAAACACGGTAATGTTGTGAATGCTCGGGTAGTCTATGACAGGGAGTCAGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCGTTGCTGCTCTTGATGGCGAGAGTTTGGACGGAAGGGCAATTAAGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA 873 0.5132 MSITSLTMAESCLLSSPSSLFHTKTKPSLFTPPSKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLAETEAGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAEDRPRRGSF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01564 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Gma06g01564 290 MobiDBLite consensus disorder prediction 73 102 - -
Gma06g01564 290 Gene3D - 62 195 IPR012677 -
Gma06g01564 290 CDD RRM_HP0827_like 207 282 - -
Gma06g01564 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Gma06g01564 290 CDD RRM_HP0827_like 110 185 - -
Gma06g01564 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 277 IPR000504 GO:0003723
Gma06g01564 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 180 IPR000504 GO:0003723
Gma06g01564 290 SUPERFAMILY RNA-binding domain, RBD 105 200 IPR035979 GO:0003676
Gma06g01564 290 Gene3D - 196 290 IPR012677 -
Gma06g01564 290 PANTHER RIBONUCLEOPROTEIN 2 84 - -
Gma06g01564 290 PANTHER RIBONUCLEOPROTEIN 94 290 - -
Gma06g01564 290 SUPERFAMILY RNA-binding domain, RBD 196 288 IPR035979 GO:0003676
Gma06g01564 290 SMART rrm1_1 110 183 IPR000504 GO:0003723
Gma06g01564 290 SMART rrm1_1 206 279 IPR000504 GO:0003723
Gma06g01564 290 PANTHER OS02G0815200 PROTEIN 2 84 - -
Gma06g01564 290 PANTHER OS02G0815200 PROTEIN 94 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01564 Gma-Chr6 15203276 15206025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01564 111 290 Eukaryotic Initiation Factors Gene Family AT3G16380 24.444 3.57e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01564 - - gmx:100790280 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01564 06 15203276 15206025 Gma04g01845 04 48543601 48546196 ECH
Gma06g01564 06 15203276 15206025 Gma06g01564 06 15203276 15206025 ECH
Gma04g01845 04 48543601 48546196 Gma06g01564 06 15203276 15206025 GST
Gma17g01169 17 10217076 10219178 Gma06g01564 06 15203276 15206025 PCT
Gma05g00411 05 3874521 3877228 Gma06g01564 06 15203276 15206025 PCT
Gma06g01564 06 15203276 15206025 Gma17g01169 17 10217076 10219178 PCT
Gma06g01564 06 15203276 15206025 Gma05g00411 05 3874521 3877228 PCT