Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01556 ATGACAAGCACTCTTCTGTCTTTGCTTTTCTTGCTCTTCTCCCTTCTCATTCCATCCTTCATTTCCTCTTCACCAGTTCGAAACCCTGAAGAAGTCGTACAAGAGGTCAACAGGAAAATAAATGGGTCTATAGCAAGGCCTAGGAGAAACTTGGGCTACCTCTGGTGTGGCAGTGGCAACCCCATTGATGACTGTTGGAGGTGCGACCCCAACTGGGAGCAGAACAGGCAGAGGCTAGCTGACTGCGCAATCGGGTTCGGCAAGAACGCCATCGGCGGCAGGGACGGCAAGATCTACGTGGTGGACGACGACGGCGATGACGATGCCGTAAACCCGAAGCCGGGAAGCCTCCGGCACGCCGTGATCCAAGACGAGCCCTTATGGATAATCTTCGCAAGAGACATGGTGATCCAGCTGAAGGAGGAGCTTCTCATGAACTCCTTCAAGACCATCGACGGAAGAGGCGCCAGCGTGCACGTTGCTGGGGGTCCATGCATAACGATACAGTACGTGACCAACGTCATCATCCATGGGATTCACATTCACGATTGCAAACAGGGAGGGAACGCTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGAACCGTGTCGGACGGCGATGGCGTGTCGATCTTCGGAGGGAGTCATGTGTGGATCGACCATTGCTCGCTCTCTAACTGTAACGATGGGTTGATCGACGCCATCCATGGCTCCACCGCTATTACCATTTCTAATAACTACATGACGCATCATGATAAGGTCATGTTGTTGGGTCACAGCGATGCTTACACCCAGGACAAGGCCATGCAAGTCACTATTGCTTTCAACCACTTTGGTGAAGGCCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGGTATTTCCATGTGGTGAACAATGATTATACTCACTGGGAAATGTATGCCATTGGTGGAAGTGCTAATCCAACCATCAACTGCCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAACGTGAAGATGCGCCAGAGAGTGAGTGGCAGGATTGGAATTGGAGGTCAGAAGGGGACTTGTTAGTAAACGGTGCGTTTTTCACATCATCGGGTGCTGGAGCCTCCTCTAGCTATGCAAGGGCTTCTAGCTTAAGTGCAAGACCATCTTCCCTTGTTGGTTCCATAACAACAGGTGCTGGTGCACTCAGTTGTAAGAAAGGTTCTCCTTGCTGA 1227 0.5151 MTSTLLSLLFLLFSLLIPSFISSSPVRNPEEVVQEVNRKINGSIARPRRNLGYLWCGSGNPIDDCWRCDPNWEQNRQRLADCAIGFGKNAIGGRDGKIYVVDDDGDDDAVNPKPGSLRHAVIQDEPLWIIFARDMVIQLKEELLMNSFKTIDGRGASVHVAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWIDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKAMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINCQGNRFVAPDDRFSKEVTKREDAPESEWQDWNWRSEGDLLVNGAFFTSSGAGASSSYARASSLSARPSSLVGSITTGAGALSCKKGSPC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01556 408 PANTHER PECTATE LYASE 1 405 - -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Gma06g01556 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Gma06g01556 408 SMART amb_all 134 331 IPR002022 -
Gma06g01556 408 SUPERFAMILY Pectin lyase-like 60 399 IPR011050 -
Gma06g01556 408 PANTHER PECTATE LYASE 18-RELATED 1 405 IPR045032 GO:0030570
Gma06g01556 408 Pfam Pectate lyase 144 325 IPR002022 -
Gma06g01556 408 Gene3D - 59 401 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01556 Gma-Chr6 15131642 15133940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01556 1 408 Polysaccharide Lyase AT5G63180 78.832 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01556 K01728 - gmx:100787082 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01556 06 15131642 15133940 Gma04g01853 04 48634973 48637427 ECH
Gma18g00110 18 877923 879819 Gma06g01556 06 15131642 15133940 ECH
Gma06g01556 06 15131642 15133940 Gma06g01556 06 15131642 15133940 ECH
Gma04g01853 04 48634973 48637427 Gma06g01556 06 15131642 15133940 GST
Gma17g01175 17 10273617 10275499 Gma06g01556 06 15131642 15133940 PCT
Gma05g00418 05 3937715 3939693 Gma06g01556 06 15131642 15133940 PCT
Gma06g01556 06 15131642 15133940 Gma17g01175 17 10273617 10275499 PCT
Gma06g01556 06 15131642 15133940 Gma05g00418 05 3937715 3939693 PCT