Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01555 ATGATGGATGGGCGGCGGCATTCGGTCGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCAACCACTAATTCCATGAGCAAACTCTCTTCTCTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGCAATGAGATTTCCCTGCGGTTTTCGGATGCTGCTGGGCCATGTGATTCTGATGATAATGCTGCTTTCAGATCAAGGAATTTAGGTTTCAAGGGACATAGGAAGCCGGATGATGCTGATTTTTTATTGAATCATGGCCTGTTGAACTCAAGGTTGAAGCCTAGTGGGATGATGTCTTGTAAGGATGATCAACAAGATGATGAAATGGTTCACTCTAAGCCTAATCTGCAGTGCATTTCTGGAGATAAATCACCCAGTGAAAGCTGTGGTAGCAACCTTGGGGGTAAAGGATTGGACTTGTCTTGTATTGTGCTTCCAAGTAATAATTTCAAGGATGGGGATTCATGCTATATAGAAACTGCTAGATCATCTCAATTAGGGAGAACAGATTACTCCAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCGTCGGAGGTAGCGATAAGTATTGCTAGCAATGAAGGCAGTCCATGTCCTTCTGGTTATGATGCTTTTTCGCCTTATAGTGCTAAAGTAGGTATAAATCAAGATGTTGATGTTTTAGATAACAATGATGATGGATGTGGAATAAGCTGCTGTTGGTCGAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCTCATCGAGTTGATGAGACGGATCTTGATGCACACAGGAGCATGAGACACAATGGTGGTGGGATTAGTCCAACTTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGCTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGCGGCACCGGCAAGACATCCACGTCTAGGATGTTTGCCGCTGCACTGAATTGCCTGTCTGTTGTGGAGAAAAGGCCATGTGGTCTATGCAGAGAATGTGTTTTGTTATTTTCTGGAAGAAATAAAGATGTTAAGGAAGTGGATTCTGTGACAATCAATCGCGCGGAACAGGTTAAATCCCTTATCAAGAATGCAAGCATCCCTCCGGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAATGGGGAGACGTGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCCGACATTGTATGCAGACTAGAAAAAATTTGTGCCGAAGAAGGCCTTGATTTTGAACAGGATGCTTTGGACTTTATCGGTGCAAAATCCTGCGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGCTTGCTTGGTAAAAAGATCAATATTTCTTTAGCTTACGAGCTTACTGGGATCGTTTCCGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGATACATCGAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCACCTTGTATCTCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGACGTCAGAAGTAGATTTTCTCGGAGACACAACTCTGAAGCTGATCTTCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAAATTCGAAGAATCAAACAACATGGTTCATTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTGTCAATCTGTGGATGCAAATGATACCAAGTTGAGTCTTAGAGGTGCATGCAATGGAGGGCAAAGGTTGGAACATGTTACTACAGGCCTTTGTGATAACAAGTCATACAGATTAGAACCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCACTCTAGTCAGCTCAAAACTTTTTTCAGGAACAAGGGGAAGTTGTCTTCACTTCATGTTGATGGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACATTGAGTTGAGGATCACCTATGCACCGTGTGCTTCTGATTCCAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCTCACAGAATTCGTCAACAGAAGTCCTTATCATCTAATGAACAAGTAAGTGAATCAGATTACGCTGACTACACCTCGGAAAATCCCATGATGAAGGATAGAATTTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCTTTGAGGAGTAGCGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAGAACATCAAGTGCTGAAGTGGATTTCTCTAAAGAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAACCACCAATCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGATCTTCACATTCATCCAAGTTGACTTTTCAGGTACTATACCTCCATGTGGTGGGGCGGCAACCTACAGAGGGGTCCATTAAGAAGCCGAAGTCGTCGCTCATCATAATGCAGGATAGCGCCAACACGCTCCGTGCCCACATCCTCGAAATTGCTAGCCACTGTGACGTCTTCGAAATCGTCACCAACCACATGTGTCATTGCTGGCGTGAGATATGTATCCTCAAAGGCAGCGTAATGATAAAAAATATGAGTCTACAAAAGCTGGCATCAACAAGCATGGGGGATGAGTCTCAGCATATAACGTCGTGA 3051 0.4258 MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSGNEISLRFSDAAGPCDSDDNAAFRSRNLGFKGHRKPDDADFLLNHGLLNSRLKPSGMMSCKDDQQDDEMVHSKPNLQCISGDKSPSESCGSNLGGKGLDLSCIVLPSNNFKDGDSCYIETARSSQLGRTDYSKSAKKSLRKNQVKPSEVAISIASNEGSPCPSGYDAFSPYSAKVGINQDVDVLDNNDDGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLDAHRSMRHNGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSTSRMFAAALNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKNASIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDADIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGSDVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSVDANDTKLSLRGACNGGQRLEHVTTGLCDNKSYRLEPEDHKGTLDSIWYKATEMCHSSQLKTFFRNKGKLSSLHVDGSTACLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRITYAPCASDSKYAKLRSSFSIFGCSHRIRQQKSLSSNEQVSESDYADYTSENPMMKDRISTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETKRTSSAEVDFSKEEGYNCAHLDPSMLDSDNNHQSNCFPKTLWLQKKFRSSHSSKLTFQVLYLHVVGRQPTEGSIKKPKSSLIIMQDSANTLRAHILEIASHCDVFEIVTNHMCHCWREICILKGSVMIKNMSLQKLASTSMGDESQHITS 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01555 1016 Gene3D - 536 649 - -
Gma06g01555 1016 Gene3D - 293 470 IPR027417 -
Gma06g01555 1016 Coils Coil 604 634 - -
Gma06g01555 1016 CDD AAA 313 463 - -
Gma06g01555 1016 Gene3D - 473 535 - -
Gma06g01555 1016 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 110 903 - -
Gma06g01555 1016 SUPERFAMILY post-AAA+ oligomerization domain-like 542 644 IPR008921 GO:0003677|GO:0006260
Gma06g01555 1016 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 110 903 - -
Gma06g01555 1016 Pfam DNA polymerase III, delta subunit 315 472 - -
Gma06g01555 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 521 IPR027417 -
Gma06g01555 1016 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 299 645 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Gma06g01555 1016 SMART AAA_5 331 474 IPR003593 -
Gma06g01555 1016 CDD HLD_clamp_pol_III_gamma_tau 472 535 IPR045085 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01555 Gma-Chr6 15102837 15108021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01555 290 634 Core DNA Replication Machinery Family AT1G21690 24.355 4.24e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01555 - - gmx:100812040 1819.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01555 06 15102837 15108021 Gma06g01555 06 15102837 15108021 ECH
Gma04g01854 04 48665179 48669460 Gma06g01555 06 15102837 15108021 GST
Gma17g01176 17 10297575 10301911 Gma06g01555 06 15102837 15108021 PCT
Gma05g00419 05 3963514 3967896 Gma06g01555 06 15102837 15108021 PCT
Gma06g01555 06 15102837 15108021 Gma17g01176 17 10297575 10301911 PCT
Gma06g01555 06 15102837 15108021 Gma05g00419 05 3963514 3967896 PCT