Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01550 ATGGGAGTAGTTTCTGAAGGAAACGGCGACGTTTTACCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGGCCGAGCGCCGCGGAGTTTCAAGATCCTATAAGTTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAGACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAGACCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGCAGAGCGGTGATCGCTACACCTTCACCGAGTTCGAGTCCAAGGCCAAGTCCTTTGAGAAGACATACCTCAAACGCCACGCCAAGAAGGCCTCCGGCCTTGGCCCGGGCCCTCTGGAGACTGAAACGCTGTTCTGGAAGGCGACGCTGGACAAACCGTTCTCCGTGGAATACGCGAACGACATGCCGGGGTCAGCCTTTTCCCCGAAATGCAGGCGCGTAGGGGATCCAAGCTCACTGGCTGACACTCAGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCATGTTGAGGATCATGACTTGCACAGCCTCAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGTGACGCCGCCGTTGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTACTCTTGGTGAGAAAACCACAGTGATGTCTCCTGAAGTATTAATTAGCGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACGTTTCCCAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGCGGAGAGGCAGCGAACATTGCAACACCTGAATGGTTGAGGTTTGCTAAAGATGCTGCAATTCGGAGGGCTTCATTAAATTATCCTCCCATGGTTTCACACTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGTGAGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGATAAGAAGGGTGAAGGAGAGACTGTAACTAAAGAACTATTTGTCCAAGATGTGTTACAGAACAATGATCTGCTTCATATACTTGGGAAAGGATCTGATGTAGTACTTCTTCCTCGTAGCTCAGTTGACATTTCTGTTTGCTCAAAATTACGTGTTGGATCCCAACAATCCATCAATGTAAGAAATTCTGAGGGAATGCATTCCTCAAAAGGTTTTGTTTCAGATGATCTGGTATTCAACAGGAGTCCAGGAATCAAGCAAGAAAAAAGTTTCTATTTTGTGAAAGACAAGTTTACTACATTGTGTGAAAGGAACAGGATTTCCACTTTTAATGTAAATGGTAACATAAGCACTGCAAGCTCTAATCCACTTCAAAGAGACAATGATAGAGAAACTAGTCAAGGAGATGGGTTATCAGATCAGAGATTGTTTTCATGTGTAACATGTGGAATATTATGCTTTTCCTGTGTTGCAATTGTACAGCCCAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAGCAATAAGCTTACTATTGCCCATGAAGATGCAACTATTACCAAGCCAAATATGTATACAGGCAGGTTTTATAATGAAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCATCTGACTCTGAGGAAGATCATATTACAGATGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAATGTTTACTTTCTCATACTCAAAATTCCCATGCTAGTCCCATGACTGCACTTGACAGGGATGACAATATTCCTTCAACAAGTGCCACTTGTGAGAATTTTATGCATCGTAGATTTGAATGTAATTTGAATCATCAGTCTGTAGACCACTCTTTAAAGAAACAGGATTATAATATTACATCAGAGGTTAAATTTGAAAATACAAAGATGGTGCCTAATTTCACCTCTAATTGTTCCCAACACACTCATGATGCTGACAGGTCATTGTCTAACAAGTCTATGGTTCCCTTTGATAATAAAAATACTTCGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATGTTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGTCTGAAGCAAAAATGGTGGCAGAAGATTTGGGGATTGATTATATGTGGAAGAATATTGCATACAGGCATGCTTCCACGGAGGATGAGGAGAGGATCCAGTCAGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTATTCATTTGGTTGTAGCTCTCTAGCAAGCTCACCCATAGAACCAAAGGTCTACCAAAGAAGGGTCAACAGGCAGAAAAAGGTTGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGACTCTGAAGATGTTGAGGATGAGAAACTCATACTTGGGTGGATATTACCTGATGAGAAATTTGAGAAATCAGGAAGTACCCCCAAAAGAGAAACTACTAGCAGAAAATCAGGTAAGAAAAGGAAAATGACAGCAGAGAATGGACGACCCAGGAAAGGAAGTTATGCTAAGAAAAATTTAGTTGCTGATAATTCCACTGAAGATAAACACAACTCACAGCCAAGGAGGATTCTTAGAAATAAGAAAGCTAGGTGTGTTGAAAGAGACCATGCTGCTTTGAAAGGGGATTATTCTCCTTCATATCATCGGAAACCTATAAGCAAGCAAGCAAACTGCTCTGAAAGTGATGCAGTTTCGGATGATTCGCTTGATGATGATGATCACATGCAGCAAAGCAGAAATGTTAAAGTTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACTATGACTCTGATTGCCAGCAGAGGGAAGAACATAGCAGCAAGCAAGTTGAAGATATGGAGAGAGATGCAAATTCAGAAGATTTTTTGGATGTTGGTTCTCTTCAGCTGCAACGGAAGACTTCCAGAGCCATGCATGCCAAAAGCATCAATGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTTCGAAAGAGGCAAAAGAGAATTCCTAAAAACAGGCAGGGCAAATACCTTACTGGAAAAGATATAATATCTGACAACCAACTAGAGCTGAAAATGAAGAAGCAGCAACGGATGAATCCTAAAAGCAGGCAAGCCAAATACCTCAACGAAGAGGATATTGCATCAGATGACCAATTGGAGGACCATTATCGTAGATATCAAAGGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCAATTGGAGAATCATTGTCAGAAGCAGCAAACAAATTTCTCTAGGAAAAGGCAAAACAAAGGCAATGTTAGAGAGGTTAAAAACGAAATGTGTGATGACCAATTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAATAAACACACTGAGAAAGAAGTCATGAATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCCGCTGAGGAGAGCACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCTGAAACAAGCTAATTCCTTCCAAGCAAAAAAGCAGGCATCTCGGCCCATCAAACAGGGCTCTCGGTTGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTGCTCATTTGTGGAATAAGCAATCTAATAACACTCAGGAATTTAGTTTATATATGGAAGAGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCAGCTGCAAAGGTTTCGGTTGGCCATGCCAAAATGAAGGATGGGGAAGCAGAATATCGGTGTGATATTGATGGGTGCGCTATGAGTTTTGGGTCGAAACAGGAGCTGATGCATCATAAGAAAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCACCGTCGAGTTCATGAGGATGAGCGCCCGTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGGGTCCACACTGGTGCAAGACCTTATGTATGTGCCGAGCCAGATTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG 4695 0.4377 MGVVSEGNGDVLPWLKSMPVAPEYRPSAAEFQDPISYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAETGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFTEFESKAKSFEKTYLKRHAKKASGLGPGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRVGDPSSLADTQWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPVSISAEPRSSRLKDKKGEGETVTKELFVQDVLQNNDLLHILGKGSDVVLLPRSSVDISVCSKLRVGSQQSINVRNSEGMHSSKGFVSDDLVFNRSPGIKQEKSFYFVKDKFTTLCERNRISTFNVNGNISTASSNPLQRDNDRETSQGDGLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSSNKLTIAHEDATITKPNMYTGRFYNENGNTALALLASAYGNSSDSEEDHITDDSHESNVINSASECLLSHTQNSHASPMTALDRDDNIPSTSATCENFMHRRFECNLNHQSVDHSLKKQDYNITSEVKFENTKMVPNFTSNCSQHTHDADRSLSNKSMVPFDNKNTSMVLQSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHMLLLCHPDYPKIESEAKMVAEDLGIDYMWKNIAYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYSFGCSSLASSPIEPKVYQRRVNRQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKLILGWILPDEKFEKSGSTPKRETTSRKSGKKRKMTAENGRPRKGSYAKKNLVADNSTEDKHNSQPRRILRNKKARCVERDHAALKGDYSPSYHRKPISKQANCSESDAVSDDSLDDDDHMQQSRNVKVEKAKFMDNDVVSNDTMDYDSDCQQREEHSSKQVEDMERDANSEDFLDVGSLQLQRKTSRAMHAKSINEEDIISDDQMESPFRKRQKRIPKNRQGKYLTGKDIISDNQLELKMKKQQRMNPKSRQAKYLNEEDIASDDQLEDHYRRYQRNPKGRQATCVAGEDEMSDDQLENHCQKQQTNFSRKRQNKGNVREVKNEMCDDQLEDHFLKQHRRFPKSRQNKHTEKEVMNDLAENNSHLLHRTPKRKQAKCMEDDMNSDDEMEDDQPLRRALRSKQAKPKTLLKQANSFQAKKQASRPIKQGSRLLVKSKAPQQIKQPAHLWNKQSNNTQEFSLYMEEEEDGGPSTRLRKRATKAQESEGKLKDKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYRCDIDGCAMSFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ 1564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01550 1564 MobiDBLite consensus disorder prediction 941 972 - -
Gma06g01550 1564 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1184 1554 - -
Gma06g01550 1564 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1078 - -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1394 1419 - -
Gma06g01550 1564 Gene3D Cupin 14 353 - -
Gma06g01550 1564 SUPERFAMILY beta-beta-alpha zinc fingers 1444 1500 IPR036236 -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1391 1422 - -
Gma06g01550 1564 SMART cupin_9 180 349 IPR003347 -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1290 1320 - -
Gma06g01550 1564 ProSitePatterns Zinc finger C2H2 type domain signature. 1473 1495 IPR013087 -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 506 525 - -
Gma06g01550 1564 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Gma06g01550 1564 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1184 1554 - -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 981 1016 - -
Gma06g01550 1564 ProSiteProfiles Zinc finger C2H2 type domain profile. 1531 1562 IPR013087 -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1290 1309 - -
Gma06g01550 1564 ProSiteProfiles Zinc finger C2H2 type domain profile. 1471 1500 IPR013087 -
Gma06g01550 1564 ProSiteProfiles JmjC domain profile. 180 349 IPR003347 -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1075 1100 - -
Gma06g01550 1564 Pfam jmjN domain 22 55 IPR003349 -
Gma06g01550 1564 ProSitePatterns Zinc finger C2H2 type domain signature. 1503 1525 IPR013087 -
Gma06g01550 1564 Pfam JmjC domain, hydroxylase 213 331 IPR003347 -
Gma06g01550 1564 SMART c2h2final6 1531 1557 IPR013087 -
Gma06g01550 1564 SMART c2h2final6 1471 1495 IPR013087 -
Gma06g01550 1564 SMART c2h2final6 1501 1525 IPR013087 -
Gma06g01550 1564 SMART c2h2final6 1448 1470 IPR013087 -
Gma06g01550 1564 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1078 - -
Gma06g01550 1564 Coils Coil 1409 1429 - -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 1066 1100 - -
Gma06g01550 1564 SMART JmjN_1 20 61 IPR003349 -
Gma06g01550 1564 SUPERFAMILY beta-beta-alpha zinc fingers 1487 1529 IPR036236 -
Gma06g01550 1564 Gene3D Classic Zinc Finger 1528 1557 - -
Gma06g01550 1564 Gene3D Classic Zinc Finger 1499 1527 - -
Gma06g01550 1564 Gene3D Classic Zinc Finger 1469 1498 - -
Gma06g01550 1564 MobiDBLite consensus disorder prediction 941 1049 - -
Gma06g01550 1564 SUPERFAMILY beta-beta-alpha zinc fingers 1519 1553 IPR036236 -
Gma06g01550 1564 SUPERFAMILY Clavaminate synthase-like 176 367 - -
Gma06g01550 1564 ProSiteProfiles Zinc finger C2H2 type domain profile. 1501 1530 IPR013087 -
Gma06g01550 1564 ProSitePatterns Zinc finger C2H2 type domain signature. 1533 1557 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01550 Gma-Chr6 15037232 15047090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01550 754 855 C2H2 Transcription Factor Family AT5G04240 33.333 5.08e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma06g01550 JmjC 2.1e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01550 - - gmx:100810437 3136.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01550 06 15037232 15047090 Gma06g01550 06 15037232 15047090 ECH