Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01549 ATGAGTGAGAGGGAAAATACAATATCTTATACTAGACTAACATCTTTTCTTCGTAAAGATACCTCATTTCTTAGTCCTTGGAGTTGGCCGGTTCGAAATCGCAATGCTGCTGCCGTGAATATTGAGACTTCAAGTTCAAGAAATGTCGAGCAGTACCTTCTTCAACCTGGATCATATTTTGAATCTATATGGCCACCTATCTTCGAATCTAGGAGGAATCTGCGTCCACCTTCAACAATTTATATGCACTTTCACTATAATAAACAAATTGAAGAGCTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACCGGGCACTGCAAGTTCAAATCTGATTGTAAATTTCACCATCCAAAGAGTTGGATTGAAAGATTACCTCCATGCAACCTCAATGACAAAAGTCTACCTTTGAGACCGGAGCGAAAGGTTTGCCGGTATTACGGCCGTTACAGAATTTGCAAATTTGGACGAGTTTGTATGTTCCACCACCCTCAACTATGCAAGACTTCATCAAAAGCTCGTGAACTCAAACTCTGCTAG 552 0.4076 MSERENTISYTRLTSFLRKDTSFLSPWSWPVRNRNAAAVNIETSSSRNVEQYLLQPGSYFESIWPPIFESRRNLRPPSTIYMHFHYNKQIEELPERPGEPECSYFLKTGHCKFKSDCKFHHPKSWIERLPPCNLNDKSLPLRPERKVCRYYGRYRICKFGRVCMFHHPQLCKTSSKARELKLC 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01549 183 SUPERFAMILY CCCH zinc finger 142 169 IPR036855 GO:0046872
Gma06g01549 183 SMART c3hfinal6 96 123 IPR000571 GO:0046872
Gma06g01549 183 SMART c3hfinal6 143 169 IPR000571 GO:0046872
Gma06g01549 183 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Gma06g01549 183 PANTHER PROTEIN PHOSPHATASE RELATED 78 169 - -
Gma06g01549 183 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 78 169 - -
Gma06g01549 183 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 123 IPR000571 GO:0046872
Gma06g01549 183 Gene3D - 84 173 - -
Gma06g01549 183 SUPERFAMILY CCCH zinc finger 101 124 IPR036855 GO:0046872
Gma06g01549 183 Pfam RNA-binding, Nab2-type zinc finger 148 168 - -
Gma06g01549 183 ProSiteProfiles Zinc finger C3H1-type profile. 96 124 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01549 Gma-Chr6 15022461 15024969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01549 92 169 C2H2 Transcription Factor Family AT3G02830 50.000 8.53e-19 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma06g01549 zf-CCCH 5.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01549 - - gmx:100809906 162.155