Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01548 ATGGAGCCCATTGAATCCGAATCAGTTAGTTCCTCCGCCAAAGACCAGCAACTGGGTGAACCTTCTTCCACTGTTCACCCCCTCGATCACGATCCTCAACCTTCAGATCTCAATCGCGTTACCCCTGTTGATGATGCACTTGGTGAGGAGTTTCAGAACAAGTTGGATTTGAAGGATGGGGGTGAGAGTGAGAATAATGGTTCGAACTTGGAAGATGGGGGTGAAAAATTGAGCGAGGATAAAGGTTCAAACTTGGAAGATGCGAGTGAAAAATTGGGTGATGAAGGTGCTGCTGCCCCAGAAGGTGGCAAGGGAGAAGGGTGtgatggtgatgttggtggtgttgctaatgattatggtgttatcggtgatgatgtagttgttgctgaggatggtggtgttgttcgtgatgatttagttgttgttgatgaggatgatgatgacggtgttgctgttcgtgatgatttagttgttgttgatgaggatgatgatgatgatggtgttgttcgtaatgatgtagtagttgttgttgatgttgatggttggaatggtagtgatgaGGGGTGTGATTGGATTGAGAATGAGAATGTGAATGAGAGTGAGAGTGATAAGGTGGGAGTGGAATATAAAGATGAGAGGAGCAGCGGTAAAGCTCAACAGTACCCGTTGAGGCCAGAGGCTGAAGACTGTGCATTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTCAATCACCCGCTTAGGAGGAAAAACCTGGCTAAAAACGAGAATGCGGGAGAAAGAGAAGAGCAGGAAGAAAGATCAGGCCAGACGGAATGCAAGTATTATTTAAGGTCTGGGGGGTGTAAGTTCGGAAAGGCTTGCAAGTTTAATCACACAAGAGGAAAGAGTTCATCAGCATCCTCTACTGCAGAGCTTAACTTCCTTGGCCTGCCTATTCGTGTGGGAGAGAAAGAGTGCCATTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAGGTTTAATCATCCTGATCCTACAGCTATTGGAGGAGGTGATTCTCCTTCCGGTTATGGTAATGGAAGTTCTATTTCGTTGCAAGGTGTATCACAATCATCTATATCCTCATGGTCTTCTACTAGACCATTAAATGAACCTGCTCCTTTTGTGCCGGTGATACTTTCACATAATCCAGGGGTTTCTCCCCAAAGTTCTGAATGGAATGGATACCAGGCACCAGTCTATCTATCTGAGAGGAGTCTGCATCCACCTTCAACATATGTCATGAACAACCCAGCTATAGAATCAAATGTTTATATGCACCATCAAAAACAAATGCAGGTTGAAGAGTTTCCAGAAAGGCCTGGTGAACCCGAATGCAGCTATTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCATCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTACCTTTGAGACCGGAGCAGACTGTTTGCACATATTACCGCCGTTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTCGATCACCCACCACCCTCAACTATGGCTGGACTTGATCAACAATCCTCGTATACAAACTCAGCTGGTGTTGATGTGGCTGAAAATGGAGATGCCGATGATGGGAATCAGCAGTCTGTGTAA 1689 0.3854 MEPIESESVSSSAKDQQLGEPSSTVHPLDHDPQPSDLNRVTPVDDALGEEFQNKLDLKDGGESENNGSNLEDGGEKLSEDKGSNLEDASEKLGDEGAAAPEGGKGEGCDGDVGGVANDYGVIGDDVVVAEDGGVVRDDLVVVDEDDDDGVAVRDDLVVVDEDDDDDGVVRNDVVVVVDVDGWNGSDEGCDWIENENVNESESDKVGVEYKDERSSGKAQQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPLRRKNLAKNENAGEREEQEERSGQTECKYYLRSGGCKFGKACKFNHTRGKSSSASSTAELNFLGLPIRVGEKECHYYMRTGSCKFGANCRFNHPDPTAIGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNEPAPFVPVILSHNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAIESNVYMHHQKQMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPEQTVCTYYRRYGICKFGPACKFDHPPPSTMAGLDQQSSYTNSAGVDVAENGDADDGNQQSV 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01548 562 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 10 561 - -
Gma06g01548 562 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Gma06g01548 562 ProSiteProfiles Zinc finger C3H1-type profile. 500 528 IPR000571 GO:0046872
Gma06g01548 562 MobiDBLite consensus disorder prediction 1 111 - -
Gma06g01548 562 Gene3D - 193 259 - -
Gma06g01548 562 Gene3D - 410 489 - -
Gma06g01548 562 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Gma06g01548 562 MobiDBLite consensus disorder prediction 532 562 - -
Gma06g01548 562 SUPERFAMILY CCCH zinc finger 223 252 IPR036855 GO:0046872
Gma06g01548 562 SUPERFAMILY CCCH zinc finger 459 483 IPR036855 GO:0046872
Gma06g01548 562 MobiDBLite consensus disorder prediction 1 23 - -
Gma06g01548 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 503 527 IPR000571 GO:0046872
Gma06g01548 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 296 IPR000571 GO:0046872
Gma06g01548 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 456 481 IPR000571 GO:0046872
Gma06g01548 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 344 IPR000571 GO:0046872
Gma06g01548 562 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 250 IPR000571 GO:0046872
Gma06g01548 562 SUPERFAMILY CCCH zinc finger 500 528 IPR036855 GO:0046872
Gma06g01548 562 Gene3D - 499 545 - -
Gma06g01548 562 PANTHER PROTEIN PHOSPHATASE RELATED 10 561 - -
Gma06g01548 562 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Gma06g01548 562 SUPERFAMILY CCCH zinc finger 275 299 IPR036855 GO:0046872
Gma06g01548 562 SMART c3hfinal6 500 527 IPR000571 GO:0046872
Gma06g01548 562 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Gma06g01548 562 SMART c3hfinal6 454 481 IPR000571 GO:0046872
Gma06g01548 562 SMART c3hfinal6 320 345 IPR000571 GO:0046872
Gma06g01548 562 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Gma06g01548 562 Gene3D - 260 348 - -
Gma06g01548 562 MobiDBLite consensus disorder prediction 73 94 - -
Gma06g01548 562 MobiDBLite consensus disorder prediction 532 546 - -
Gma06g01548 562 ProSiteProfiles Zinc finger C3H1-type profile. 454 482 IPR000571 GO:0046872
Gma06g01548 562 SUPERFAMILY CCCH zinc finger 319 345 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01548 Gma-Chr6 15012055 15018382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01548 450 562 C2H2 Transcription Factor Family AT3G02830 43.103 3.97e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma06g01548 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01548 - - gmx:100809906 980.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01548 06 15012055 15018382 Gma04g01861 04 48767685 48772935 ECH
Gma06g01548 06 15012055 15018382 Gma06g01548 06 15012055 15018382 ECH
Gma04g01861 04 48767685 48772935 Gma06g01548 06 15012055 15018382 GST
Gma17g01178 17 10318687 10322904 Gma06g01548 06 15012055 15018382 PCT
Gma05g00421 05 3981288 3985958 Gma06g01548 06 15012055 15018382 PCT
Gma06g01548 06 15012055 15018382 Gma17g01178 17 10318687 10322904 PCT
Gma06g01548 06 15012055 15018382 Gma05g00421 05 3981288 3985958 PCT