Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01542 ATGGCGGCGGTAGCGGTGGCAGAGGTTGGGAAGGCCCCACGgccgggccagggcggttacgaagcgcacggcctgagcgaggaggaggctcgtgtacgcgccatcgcggagatcgtgagttccatggtggacctctcccacaaaggccagaacgtggacctgaacgcgctcaagtccgcggcgtgccgcaagtaccggctctcacgcgcgccgaagctcgtggagatgatcgcggcgctccccgacgccgagcgcgagacgctcctccccaagctccgcgccaagcccgtccgcaccgcctccggaatcgccgtcgtcgccgtcatgtcgaagccgcaccggtgcccacacatcgccaccaccgggaacatctgcgtctactgccccgggggacctgactccgacttcgagtacagtacccagtcttacaccggttatgaaccaaccagcatgcgtgcagttcgtgcgagGTATAATCCATATGTCCAAGCGAGGTGCAGGATAGATCAGCTTAAGCGTTTGGGTCATAGTGTAGACAAGGTTGAATTTATCTTAATGGGCGGTACCTTCATGTCACTTCCGGCTGATTACCGTGATTACTTTATAAGAAATCTTCATGATGCTTTGTCTGGACACACATCTGCCAATGTGGAAGAGGCAGTGGCTTACTCTGAGCATGGGGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACTTGCGCCAAATGCTTTCTTATGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACCTATGAAGATGTTGCTCGAGACACAAATAGAGGACACACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCTGGTTTCAAGgttgttgctcatatgatgcctgatcttccaaatgttggtgttgaaagggacatggaaagtttccgggagttttttgagagtcccttgtttagagcagatgggcttaaaatatatcctacacttgtaattcgtggaactgggctttatgagctctggaaaactggcagGTATAGAAACTATCCACCAGAGCAACTTGTGGACATTATAGCAAGGATCCTTGCAAtggtacccccatggacacgtgtttatagagttcagcgggatattcccatgcctctggttacctctggggttgagaaaggaaatctgcgggagctggcattagctcgaatggaagacctgggattgaaatgtcgtgatgttcggaccagagaagctggaatccagGATATTCACCACCAAATTAAGCCAGAAGAGGTGgagcttgttcggcgtgattatatggcaaatcagggttgggaaacatttctatcatatgaagatacacggcagGATATCCTTGTTGGTTTGTTGCGGCTGCGAAAATGTGGCCGCAACACAACTTGTCCAGAGCTTATGGGGAAGTGTTCTATTGTTCGTGAACTCCATGTTTATGGAACTGCTGTACCAGTTCATGGACGGGATGCTGACAAGCTACAACACCAGGGTTATGGCACACTTTTAATGGAGGAGGCAGAGCGCATTGCTTGCAGAGAACACAGATCAACAAAAATAGCTGTAATTTCAGGGGTTGGCACACGCCATTATTACAGGAAACTGGGATATGAGCTTGAAGGACCTTACATGGTGAAATATCTAGTGAAATAA 1695 0.2319 MAAVAVAEVGKAPRPGQGGYEAHGLSEEEARVRAIAEIVSSMVDLSHKGQNVDLNALKSAACRKYRLSRAPKLVEMIAALPDAERETLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAVRARYNPYVQARCRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANQGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIACREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLVK 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01542 564 Pfam Radical SAM superfamily 123 311 IPR007197 GO:0003824|GO:0051536
Gma06g01542 564 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 562 IPR039661 -
Gma06g01542 564 Pfam Acetyltransferase (GNAT) family 415 551 IPR000182 GO:0016407
Gma06g01542 564 SUPERFAMILY Radical SAM enzymes 143 374 - -
Gma06g01542 564 ProSiteProfiles Radical SAM core domain profile. 98 388 IPR007197 GO:0003824|GO:0051536
Gma06g01542 564 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 371 558 IPR016181 -
Gma06g01542 564 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 50 562 IPR034687 -
Gma06g01542 564 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 412 564 IPR000182 GO:0016407
Gma06g01542 564 SFLD Radical SAM 53 562 IPR007197 GO:0003824|GO:0051536
Gma06g01542 564 PIRSF HAT_Elp3 20 563 IPR034687 -
Gma06g01542 564 CDD Radical_SAM 112 359 - -
Gma06g01542 564 SMART MiaB 105 367 IPR006638 GO:0003824|GO:0051536
Gma06g01542 564 Pfam Radical_SAM C-terminal domain 329 408 IPR032432 -
Gma06g01542 564 SFLD ELP3-like 53 562 IPR034687 -
Gma06g01542 564 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 562 IPR034687 -
Gma06g01542 564 Gene3D - 414 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01542 Gma-Chr6 14882375 14887601 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Gma06g01542 Radical_SAM 2.4e-16 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01542 K07739 - gmx:100784961 1141.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01542 06 14882375 14887601 Gma06g01542 06 14882375 14887601 ECH
Gma04g01869 04 48911686 48916922 Gma06g01542 06 14882375 14887601 GST