Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01499 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATCATGTGGATAAGGCAACAACCTTACAACAAAACATAGGAACAAAGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCTAGTGGTGCTGCTGCTTCTGCAGGAGTTTCCAAAATGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAACCATAAGCAGCACATCACTCACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTACCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAGGTCCACACGTATATGCTTCCACTGCCATGGTTAGCCCAGATTGGAGTGGTGCACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCACCACCACCACCAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGCAACCATCATCCCTCCACACTCAGCAACCAAAACCCGCCACCTTTCCCATCCCCTTCCATCTGCCACACGCTTCTCAGGACCGGCCCTCTATCAGAAACCTGCGGCGGAGGAGCGAAAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACAACAACAGCAAGTAATAATAATAACAACTCGCTGCATGACACTATTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGAGGGAATGGTTTGAACCAAATGGTACAGCAGCCTCCTCCTCCCTCAATGTCCCTCATGATGCAGCCCTTAGGCCTTAGCTTGCAGGATAATAACAACAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATGTATAGCTTGGCTTCTGATCATCATGGATCCCACTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG 1251 0.4692 MDWNLKAPSWDLVDHVDKATTLQQNIGTKEEQNRFGVYRMKGEFSVDLKLGHHHVGNSGTESALANKSKDAAAASGAAASAGVSKMASSPSGSSKRARTISSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSGPHVYASTAMVSPDWSGALVTSSADARLHNHNHHHHQQDLFLGSSHKEGKQVAFLHSNHHPSTLSNQNPPPFPSPSICHTLLRTGPLSETCGGGAKSKMFCESLTTTTTTTASNNNNNSLHDTIPCALSLLSSSQTHTPGGNGLNQMVQQPPPPSMSLMMQPLGLSLQDNNNNSLESVDHCSSMYSLASDHHGSHCNEAAPQLFPFQWE 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01499 416 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Gma06g01499 416 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 416 IPR044817 GO:0003677
Gma06g01499 416 Pfam SBP domain 109 182 IPR004333 GO:0003677
Gma06g01499 416 Gene3D - 100 170 IPR036893 GO:0003677|GO:0005634
Gma06g01499 416 SUPERFAMILY SBT domain 107 188 IPR036893 GO:0003677|GO:0005634
Gma06g01499 416 MobiDBLite consensus disorder prediction 170 193 - -
Gma06g01499 416 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 24 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01499 Gma-Chr6 14455632 14460234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01499 1 416 SBP-box Gene Family AT5G50670 38.695 2.65e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma06g01499 SBP 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01499 - - gmx:102664649 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01910 04 49364806 49376426 Gma06g01499 06 14455632 14460234 GST
Gma05g02000 05 41376760 41379554 Gma06g01499 06 14455632 14460234 PCT
Gma08g00108 08 946692 949230 Gma06g01499 06 14455632 14460234 PCT
Gma06g01499 06 14455632 14460234 Gma05g02000 05 41376760 41379554 PCT
Gma06g01499 06 14455632 14460234 Gma08g00108 08 946692 949230 PCT