Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01467 ATGATGTCGAGAATAAACAACAACGGCGTTGCCTGGATGGGCGAACGAGAAGACGAAAACTCTCGAAACCACAACATCATACCCACCGACACAACCACAACAAACACAGGTTTCGTCGAAACCACAAACAACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGACGTCGACGACGAATGGTACAACAACATcaccaaccaccaccaccaccaccaccaccaccacGACATGACCTTCGACCCCGACAACCTCTTACTCCACGCTGCCACCGCCGTGGACTCCTCCTCCTCCTGCTCCCCCTACTtTTTCCCTCCCAATCCCAAACCCCCCTTTCTTGTCAACCCCTTCGATATGGGCTTTCTTGACCCTCAAGCTTCTTCTTCTCCCTCTCTACCCCTTCTCCCCGAATCAACACACTTCACACCCCCTCACACCACCACCACCGCTTTCGCCGGCTTCCAGAGCCGCCTCCAAGAGAGTGGTTCTTCAAAATCTCTCTTTTTGAGGCCTCTCGAGTCGCTGCCACCCTCCGGGGCGCAACCCACGCTGTTTCAGAAGAGAGCCGCGCTTAGAAAAAACATGGAAGGGAGTGATAATAATAAGAAGAAGAGGAAGGAGAAGGAGAAGGACGAGGAGGTTGAGGATTTGAGTTTCGATGGCTCCGGGTTGAACTATGATTCTGATGACTTGACTGAGAGCAATTATAATAATGTTTCTGAGGGTAATACTGGGAAGAATGGTGGGGTTAGTTCCAACGCGAACAGCACCGTCATCACCGGTTTGGATCAAAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGTTGAGGTCCGTTGTTCCCAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTGCATAACGAGTTGGAATCGACACCAGTGGGTTCTTCACTCACTCCTGTCTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACGCTGCCAAGCCGAATCAAGGAAGAACTGTGCCCCAGCTCATTGCCCAGCCCCAATGGCCAACCTGCTGGTAATGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTGGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAA 1392 0.4885 MMSRINNNGVAWMGEREDENSRNHNIIPTDTTTTNTGFVETTNNDLGSLCAFKPMLDVDDEWYNNITNHHHHHHHHHDMTFDPDNLLLHAATAVDSSSSCSPYFFPPNPKPPFLVNPFDMGFLDPQASSSPSLPLLPESTHFTPPHTTTTAFAGFQSRLQESGSSKSLFLRPLESLPPSGAQPTLFQKRAALRKNMEGSDNNKKKRKEKEKDEEVEDLSFDGSGLNYDSDDLTESNYNNVSEGNTGKNGGVSSNANSTVITGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPVGSSLTPVSSFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPAGNVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01467 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 339 IPR036638 GO:0046983
Gma06g01467 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 271 320 IPR011598 GO:0046983
Gma06g01467 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 463 - -
Gma06g01467 463 CDD bHLH_AtAMS_like 274 339 - -
Gma06g01467 463 CDD ACT_UUR-ACR-like 392 452 - -
Gma06g01467 463 Gene3D - 265 334 IPR036638 GO:0046983
Gma06g01467 463 MobiDBLite consensus disorder prediction 193 218 - -
Gma06g01467 463 Pfam Helix-loop-helix DNA-binding domain 278 320 IPR011598 GO:0046983
Gma06g01467 463 SMART finulus 277 326 IPR011598 GO:0046983
Gma06g01467 463 PANTHER BHLH TRANSCRIPTIONAL FACTOR 62 463 - -
Gma06g01467 463 Coils Coil 310 334 - -
Gma06g01467 463 MobiDBLite consensus disorder prediction 192 230 - -
Gma06g01467 463 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01467 Gma-Chr6 14025083 14028576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01467 166 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 67.636 3.19e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01467 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01467 - - gmx:100217341 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01467 06 14025083 14028576 Gma08g00077 08 667108 669536 ECH
Gma06g01467 06 14025083 14028576 Gma06g01467 06 14025083 14028576 ECH
Gma04g01939 04 49804612 49808155 Gma06g01467 06 14025083 14028576 GST
Gma05g01974 05 41080602 41084800 Gma06g01467 06 14025083 14028576 PCT
Gma08g00077 08 667108 669536 Gma06g01467 06 14025083 14028576 PCT
Gma06g01467 06 14025083 14028576 Gma05g01974 05 41080602 41084800 PCT
Gma06g01467 06 14025083 14028576 Gma08g00077 08 667108 669536 PCT