Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01459 ATGCCTTCTGAAATCATGGAGAAGAGGGGTGCTTCTGCCTCATCTCGCTTTTTGGATGACATTTCCTATGTTTCTGAGAAGAATACTGGATTACGAAAGCCAAAATCTATCCATGACCATTTTCTACAAGGGAAGAGTGAAATGGCGGCATCACCTGGCATCATTTTTAATACTTCGTCACCCCTTGAAACAAATTCAAAAACAGGCTTGTCAATTTCTCAGACTACTCTATCTCGGGAAATTACAGAAGACCTACATTTTGGCAGAGAAACAGGCAATACAGATATGCTGAAGGATTCCACCACAGAATCATTGAATTATCACAAGAGATCATGGTCTAATGTGCATAGGCAGTCAGCATCTGGCTCATATGGTCTAATTGGGAGCAAGATTGTCACCAATGCTGCCTCACGTGAAAGCAGTCTGTTTTCAAGCTCGCTGTCTGACATGTTTAGCCAAAAGTTGAGGTTATTGGGGAATGGAGTGCTGTCTGGTCAACCCATTACTGTTGGTTCCTTTCCTGAGGAAGAACCGTACAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGACCTGTTTTCTGGAGTCACTGATGAGTTAGGATTCAGTACTGGCACTAGAATGAATGATGATTTTGAAGATTTTGATTTGTTCAGCAGCAGTGGAGGCATGGAATTGGAAGGAGATGAACATCTAATTTCCGGAAAAAGAACCAGTTGCGGGGATGAAGATCCTGATTACTTTGGAGTTTCTAAAGGAAAAATTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGATTCCGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCATATATACTGCCTGCAAGTATCGTGGATTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAGATCTAGGAAACTTGATATACATTATTCAATTCCAAAGggcaatgctccagagaaggatattggtcatggtacactgatgatatctgatcttgattcatctgttctgaatgatgaactaaaacagatttttgggttttatggagaaattagagaaATCTATGAATATCCACAACTGAATCATGTCAAATTTATTGAATTTTATGATGTCCGGGCTGCAGAAGCTTCTCTTCGTGCATTGAATGGGATCTGCTTTGCTGGGAAGCACATTAAGCTTGAACCTGGTCTTCCCAAGATTGCAACATGTATGATGCAGCAATCACAGAAGGGAAAAGATGAACCTGATTTTGGTCATAGTTTGAGTGACAACATATCCTTAAGGCATAAAGCAGGAGTGTCATCTGGATTTATTGCATCTGGTGTCAGCTTGGAAAATGGATATAATCAGGGATTTCGTTCTGAAACACAGCTACCTGCTTTTATGGATAACTCACTGTTTCATGTGAATTCTAGCATTCACAAGACCACAAGAGGGGCATCTGCTGGAAAAGTATCTGGTGTTTTTGAGGCCTGTAATGCTATTGATGCGATGAAATTTGCATCCATTTCGAGGTTCCATCCTCATTCTTTACCTGAATATCGCGAAAGTTTAGCTAATGGCAGTCCTTACAACTTTTCAAGTACCATTAACATGGCTGCCAATATTGGAACTGGATCGACGGAATCATCTGACAGCAGGCACATTCAGGGAATGAGCTCAACTGGGAACCTAGCAGAGTTTAATGCAGCAGGAAATGGAAACCGCCCCCATCATGGACTTTATCATATGTGGAATGGGTCCAACTTGCATCAGCAACCTCCTTCAAATTCCATGCTTTGGCAGAAAATACCATCCTTTGTTAATGGTGCTTGTTCTCCAGGTCTTCCACAGATACCCAGCTTTTCTAGAACACCGCCTCATGTGCTTAGAGCATCTCATATAGACCATCAAGTGGGATCCGCGCCGGTTGTTGCAGCCTCACCCTGGGATAGACAACATTCTTTCTTGGGAGAGTCACCTGATGCATCTGGTTTTAGATTGGGTTCTGTTGGAAGTCCAGGCTTTCATGGTAGCTGGCAGTTGCATCCTCCTGCTTCTCACAATATATTTTCTCATGTTGGTGGGAATGGTACAGAATTGACATCAAATGGTGGGCAGGGCTCTCCTAAGCAGTTGTCACATGTTTTTCCTGGGAGACTTCCCATGACTTTGGTTTCTAAAAACCTCTATTCTCGTAGAAGTGAACCAAACACTAACAACAATGCTGATAAAAAACAATATGTACTTGACCTAGGCCGCATTTTGCGTGGGGATGACAACCGGACAACGCTCATGATAAAAAATATTCCCAATAAGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGGACTTGCTAAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGACAAATTATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAATTCAACAGTGAAAAGGTAGCGGTACTCGCCTATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTAATGAATGAAGATAAACGTTGCCGCCCCATTCTCTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTAACAATATTAGAGTGAGGCCTGGAAAAATTCGCATGAATGTTAATGAGGAGAATGGCAGCCAAGGGAATCCTTCATCTTTGGCAAGTGGAGAAGAGTCTGGGAATGGAACAGAATCTACATCGAGCTCTTCAAAAAGTTCTGACTGA 2913 0.3979 MPSEIMEKRGASASSRFLDDISYVSEKNTGLRKPKSIHDHFLQGKSEMAASPGIIFNTSSPLETNSKTGLSISQTTLSREITEDLHFGRETGNTDMLKDSTTESLNYHKRSWSNVHRQSASGSYGLIGSKIVTNAASRESSLFSSSLSDMFSQKLRLLGNGVLSGQPITVGSFPEEEPYKSLEEIEAETIGNLLPDEDDLFSGVTDELGFSTGTRMNDDFEDFDLFSSSGGMELEGDEHLISGKRTSCGDEDPDYFGVSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKYRGFVMISYYDLRAAQNAMKALQNRSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISDLDSSVLNDELKQIFGFYGEIREIYEYPQLNHVKFIEFYDVRAAEASLRALNGICFAGKHIKLEPGLPKIATCMMQQSQKGKDEPDFGHSLSDNISLRHKAGVSSGFIASGVSLENGYNQGFRSETQLPAFMDNSLFHVNSSIHKTTRGASAGKVSGVFEACNAIDAMKFASISRFHPHSLPEYRESLANGSPYNFSSTINMAANIGTGSTESSDSRHIQGMSSTGNLAEFNAAGNGNRPHHGLYHMWNGSNLHQQPPSNSMLWQKIPSFVNGACSPGLPQIPSFSRTPPHVLRASHIDHQVGSAPVVAASPWDRQHSFLGESPDASGFRLGSVGSPGFHGSWQLHPPASHNIFSHVGGNGTELTSNGGQGSPKQLSHVFPGRLPMTLVSKNLYSRRSEPNTNNNADKKQYVLDLGRILRGDDNRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKASIYLDLLNKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRVRPGKIRMNVNEENGSQGNPSSLASGEESGNGTESTSSSSKSSD 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01459 970 SUPERFAMILY RNA-binding domain, RBD 788 881 IPR035979 GO:0003676
Gma06g01459 970 SUPERFAMILY RNA-binding domain, RBD 268 428 IPR035979 GO:0003676
Gma06g01459 970 MobiDBLite consensus disorder prediction 931 970 - -
Gma06g01459 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 337 IPR000504 GO:0003723
Gma06g01459 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 358 423 IPR000504 GO:0003723
Gma06g01459 970 Gene3D - 354 449 IPR012677 -
Gma06g01459 970 CDD RRM3_MEI2_like 789 882 IPR034454 -
Gma06g01459 970 Pfam RNA recognition motif 2 786 890 IPR007201 -
Gma06g01459 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 344 IPR000504 GO:0003723
Gma06g01459 970 MobiDBLite consensus disorder prediction 936 970 - -
Gma06g01459 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 969 - -
Gma06g01459 970 Gene3D - 265 353 IPR012677 -
Gma06g01459 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 356 429 IPR000504 GO:0003723
Gma06g01459 970 CDD RRM1_MEI2_like 270 345 IPR034453 -
Gma06g01459 970 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 969 - -
Gma06g01459 970 SMART rrm1_1 357 425 IPR000504 GO:0003723
Gma06g01459 970 SMART rrm1_1 272 340 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01459 Gma-Chr6 13928166 13934968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01459 266 422 Eukaryotic Initiation Factors Gene Family AT3G16380 25.843 5.59e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01459 - - gmx:100801025 1866.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01459 06 13928166 13934968 Gma08g00071 08 597131 604940 ECH
Gma06g01459 06 13928166 13934968 Gma06g01459 06 13928166 13934968 ECH
Gma04g01945 04 49899752 49906536 Gma06g01459 06 13928166 13934968 GST
Gma08g00071 08 597131 604940 Gma06g01459 06 13928166 13934968 PCT
Gma06g01459 06 13928166 13934968 Gma08g00071 08 597131 604940 PCT