Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01456 ATGGAAGGAAGATCAATATCACATTCTTCTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATATTCTGAAAGGTCTCAGCAAGACATGTCAGCCATGGTTTCTGCTCTCACACAAGTCATTGGTGGCTCCAATAGTGATTCTCTTCAGCAGCATGAAGGCCTTTTAACTTCTTCACATAACAACACCTCAACCCAGAATAATAATGAACAATCCCAAGCACCACAACAAGAACAAGGGAGTGTAAGAAGAAGACActacagaggagtgaggcagcgtccatggggaaagtgggctgcagagattcgcgatccgaagaaagcagcgagggtatggcttggaacctttgaaacagctgaagctgcagctcttgcttatgatgaagctgctcttagattcaaaggaagcaaagcaaaactcaatttccctgaaAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCACCTCACAAATCAGCACAGCACTAGTAGTCATGATCAGCAAGCTTCTAACCCTATTATTACTCCACACTTTGCTACTACTCAAGAAACTTATTCACCAAGTCATCACTTTCAATATGCACAACAACAACTCATGGGTGGTGGGAGTAACAGCTTCAATAACAACCAAGATATGCTTCGTTTCTATGGGGGACATAACATGTTTGTTTCTTCTCAGCAATCTGCATCATCGTCTTCTTCCACTGCACTGTCTCAGAATCAGCAGGATGAGTTGCTGAGATTTTCGATGCAATTTGGAGCTTCTTCTCATTCTGACCATTCAGGGAATTGGAGGGGTGGACAATGA 810 0.3272 MEGRSISHSSEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNSDSLQQHEGLLTSSHNNTSTQNNNEQSQAPQQEQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYHLTNQHSTSSHDQQASNPIITPHFATTQETYSPSHHFQYAQQQLMGGGSNSFNNNQDMLRFYGGHNMFVSSQQSASSSSSTALSQNQQDELLRFSMQFGASSHSDHSGNWRGGQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01456 269 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g01456 269 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Gma06g01456 269 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Gma06g01456 269 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 255 - -
Gma06g01456 269 MobiDBLite consensus disorder prediction 57 80 - -
Gma06g01456 269 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Gma06g01456 269 MobiDBLite consensus disorder prediction 248 269 - -
Gma06g01456 269 MobiDBLite consensus disorder prediction 1 22 - -
Gma06g01456 269 PANTHER DNA-BINDING DOMAIN 21 255 IPR044808 GO:0003700|GO:0009873
Gma06g01456 269 MobiDBLite consensus disorder prediction 57 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01456 Gma-Chr6 13872923 13875526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01456 17 160 AP2-EREBP Transcription Factor Family AT5G61890 65.986 3.19e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma06g01456 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01456 - - gmx:100787091 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01456 06 13872923 13875526 Gma04g01951 04 49974276 49976502 ECH
Gma08g02393 08 23649421 23651961 Gma06g01456 06 13872923 13875526 ECH
Gma06g01456 06 13872923 13875526 Gma06g01456 06 13872923 13875526 ECH
Gma04g01949 04 49965077 49967582 Gma06g01456 06 13872923 13875526 GST