Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01422 ATGGAATTTATTTGGACTTGCAAATCTTGGGAATATTCTTTAATGATTTTTGCTTCCATCGTTCTCCGAACTGAAGGCTTTATCCCAATGCCGCTTTTGAAGAGAAAGCCTTTTGTGTTGCCTGAGCCACCTGATGATTTGGAGCCGCACGAGAATGTTTATCAAATTCGATTTACAAAAGAAATATTTCAAGATTACAATGATTATTTGAATCGTCTAAATCAGTATCGCCAGAGGGTTTGGACATGCAAAATTACTGGAAAATCTGGCTTGACTTATGAAGAGGCTCTGGTGTCAGAGAAGCATGCTGCTGAGAAAGTTCAACAGATTCCGGAAGAATTAGTGGCACCTGCTCTAAGGATTATCCACTACAGCATGCTCCCTTTGAAGGATCTTGCTGATTCTATTGCTGAAAAGTTGCAGGAACAGTTGTTTGTGGGCGCTCAATTGTATGGAAAAAAGAATGACAGAGTACGTCCATGTAAAGTATTGAAAGTGATGCAGGAAGATGCTGAAAATGTCCGCTATGTGGTAGCTTGGCTTGATGAAAACAATAATATTATTGAAAGAGAAGAAGTCAGCTCTCAAGATTTGGTACAGAAGAAGCCATGTTTTAGTAGAAATATTTTGAAGTCTTTTATTCGCAAATCTACATATCGAAATGCTCCTTGGGTTTTACATGATAAACTGGCAAAAAAACATGGAATCTCTACTGACATTCCAGAGGAGTTAAGGAGAAAGTTTTTCTTCAACAATGGGCTTGTGGTCTGCACCAAAAAAAGAAAAAATGAGGAAGAGTCAATCAAATATCCAATTGATGATCTATTAGTGAAGCCTAGTCCAGATGATCCTGTTTTCAGTAGTCGTCCTTCTCCATCAAGAGACTTTAATGTTCCAATTTATTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTTTATGTCTTTTGGTAAACTGTTGCGGTTGTCTCCTTACTCTCTCAAAGATTTTGAAAATGCAATTAGCCACAAGGAAAGCAATGTAGTTCTTCTAGTGGAATCTCATGCAGTACTCTTACGAGTGCTCATCAAAGGTGATTATGAATACTCTGCAGCTGTTCTGGAAAAAATACAGAAGAAGATTACATTGATTAGTTGGAAAGACTATCTATCTGATTTTCTAGAAATGATCAATATTCCCAAGTTGCGGCAACATGAAGCAACAATTAAACGGGGAGATTATGGTTATGTAGATGTCAATGCTAAATTAGAAATCTTTCGTGAACTAGTCAATAGAGCGCTTGGAACTGCTTTTGTCAGGGAAAAATTGGATGAGTTTATTGAACAGAGGacggtactgggggccgctaaaagggaagaagcaattgaagctgctgggaagagaagaaaaagaagaaaagtaaaggagcagttgaaagctgattttgaaaggaactgtggcgagaatgggcatcatcttggcCATGATGCAAGTGTGTCAACAAATAATAATCACAGAATACAGAATGGTGTCGCTGGAAAGAATAGAAACGGAGAGATAGAATCATCTAGGCAAAGAGATGCATTGGATAGTGGGATCAAGCATTCAAACATTGATTCAAAAATAAAGGCTAAAAAGTTCAATTTGGAGCTGAATAGAACAGCAGAAATTGTGGAAGTATCCAGAAAGGAATCAAAGAAACAACCAGGGGGTGATAAGGATCAATCAGAGAAAAGTGCAGAACAGAGGAGTGAATATTTTGATCGGGAGATGGAGAAATGGCGAATTCGTACAAGTCCCTTGGGTAAGGACAGATATTATAATAGGTATTGGTGGTTTCACCGTGATGGGAGGATATTTGTTGAAAGTTCTGACTCCAAGGAGTGGGGATTCTACAGTAGCAAAGAAGAGCTTGATGCATTGATGAGTTCACTGAATTGCAAAGGTGAAAGGGAAAGGGCACTGCATAAACAACTGGAAATATATTATAATAGAATATGCTCAGAACTGCAGAAAAGTTCAAAGGATTTGGTGCATAAGGTTGCCCAGGATGACTCTATGGTCCGAAGGTCTACTCGTGTTCGGGCTCCACCTAGGGAAAATCCTTCCAAAGCTTTCCTCAAATATGCCAATGTGTGGAAAGAAGAGTAA 2130 0.3606 MEFIWTCKSWEYSLMIFASIVLRTEGFIPMPLLKRKPFVLPEPPDDLEPHENVYQIRFTKEIFQDYNDYLNRLNQYRQRVWTCKITGKSGLTYEEALVSEKHAAEKVQQIPEELVAPALRIIHYSMLPLKDLADSIAEKLQEQLFVGAQLYGKKNDRVRPCKVLKVMQEDAENVRYVVAWLDENNNIIEREEVSSQDLVQKKPCFSRNILKSFIRKSTYRNAPWVLHDKLAKKHGISTDIPEELRRKFFFNNGLVVCTKKRKNEEESIKYPIDDLLVKPSPDDPVFSSRPSPSRDFNVPIYCVGDLLMVWDFFMSFGKLLRLSPYSLKDFENAISHKESNVVLLVESHAVLLRVLIKGDYEYSAAVLEKIQKKITLISWKDYLSDFLEMINIPKLRQHEATIKRGDYGYVDVNAKLEIFRELVNRALGTAFVREKLDEFIEQRTVLGAAKREEAIEAAGKRRKRRKVKEQLKADFERNCGENGHHLGHDASVSTNNNHRIQNGVAGKNRNGEIESSRQRDALDSGIKHSNIDSKIKAKKFNLELNRTAEIVEVSRKESKKQPGGDKDQSEKSAEQRSEYFDREMEKWRIRTSPLGKDRYYNRYWWFHRDGRIFVESSDSKEWGFYSSKEELDALMSSLNCKGERERALHKQLEIYYNRICSELQKSSKDLVHKVAQDDSMVRRSTRVRAPPRENPSKAFLKYANVWKEE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01422 709 MobiDBLite consensus disorder prediction 478 525 - -
Gma06g01422 709 ProSiteProfiles DDT domain profile. 300 361 IPR018501 -
Gma06g01422 709 ProSiteProfiles WAC domain profile. 51 157 IPR013136 -
Gma06g01422 709 Pfam DDT domain 302 357 IPR018501 -
Gma06g01422 709 SMART testlast3 300 361 IPR018501 -
Gma06g01422 709 MobiDBLite consensus disorder prediction 553 577 - -
Gma06g01422 709 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 52 149 IPR013136 -
Gma06g01422 709 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 589 653 IPR028941 -
Gma06g01422 709 MobiDBLite consensus disorder prediction 488 511 - -
Gma06g01422 709 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 30 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01422 Gma-Chr6 13513126 13519137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01422 530 652 Homeobox Transcription Factor Family AT5G44180 30.534 1.10e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gma06g01422 WAC_Acf1_DNA_bd 4.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01422 - - gmx:100784607 1297.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01936 05 40762545 40767871 Gma06g01422 06 13513126 13519137 PCT
Gma08g00045 08 378070 382468 Gma06g01422 06 13513126 13519137 PCT
Gma06g01422 06 13513126 13519137 Gma05g01936 05 40762545 40767871 PCT
Gma06g01422 06 13513126 13519137 Gma08g00045 08 378070 382468 PCT