Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01382 ATGAGCAACAACGCCTCCCGGAAGCGCGCGGCGCCGCCGTCGCAACCTCCACCGGCGAAGCAAGCCGTAATGACTCAGGAAGAAGAGTTCATGGACGAAGACGTGTTCTTAAACGAAACCCTCGTTTCCGAGGACGAAGAATCCCTCATTCTCCGCGACATCGAGCAGCGCCAGGCCCTCGCCAACCGCCTCTCCAAGTGGACCCGTCCTCCTCTCTCCGCCGACTACGTCGCCGGAACTCGTAGCGTCCTTTATCAGCAGCTGGAGATTGATTACGTGATTGGAGAGAGTCACAGGGAGTTGCTGCCGAACTCATCTGGACCTGCCGCCATTATCAGAATATTTGGAGTTACTAAGGAAGGACACAGTGTTTGTTGCAATGTTCATGGGTTTGAACCATATTTCTACATTTGTTGCCCTCCTGGAATGGGTCCAGATGATATCTCCCATTTTCATCAAACTCTTGAGGGAAGGATGAGAGAAGCCAATAGAAACAGTAATGTGGGAAAATTCATTCGCCGTATTGAAATGGTGCAGAGAAGGAGTATTATGTACTATCAGCAATCCAATTCCCAACCCTTTCTCAAAGTTGTAGTTGCACTCCCAACAATGGTTGCCAGCTGCCGTGGTATTCTGGATAGGGGTATTCAACTTGATGGTTTAGGAATGAAGAGCTTCTTGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAACATAGTTGGTGGAAATTGGATTGAAATTCCAGCTGGAAAATATAAGAAAACAGTGAAAAGCTTGTCTTACTGCCAGTTAGAGTTTGATTGCTTGTATTCCGAATTGGTTAGTCATGCTCCAGAAGGGGAATATTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCAAGATCCTGTAATCCAGATTGCTAATTTGGTTACTTTACAAGGAGAAGACCAGCCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATCGTTGGTGTTGATGTGATGTCATTTGAAACAGAAAGAGAAGTCCTGCTAGCTTGGAGGGATTTAATTCGTGAAGTGGACCCGGATATTATTATTGGATACAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCTGCGAACCTGAAGATAGCAGAATTTCCAATTCTGGGTCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCATCAAGGCAGTACGGGACCAGGGAAAGTAAAGAAGTTACAGTAGAAGGGAGAGTTCAGTTTGATTTACTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCACTGAATTCTGTGTCATCACACTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCCGATCTTCAGAATGGAAACGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAGCGGCTTTTGGATAAATTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTACTTTCCAGAGGCCAAAGCATTAAAGTACTTTCTCAACTTCTTAGGAAGGCAAGACAGAGGAATCTGGTCATTCCTAATGCCAAACAGGCTGGGTCTGAACAAGGAACATTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGGTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCGGGTGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCAAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTGGAGAAGGCAGTGCTAGATGGTAGACAGCTGGCCCTGAAGATTAGTGCAAATTCTGTTTATGGGTTTACAGGGGCCACCATTGGTCAGTTACCATGTTTAGAGATATCATCGAGTGTAACAAGCTATGGTCGACAAATGATTGAGCACACGAAAAAACTTGTGGAAGATAAATTTACGACACTTAATGGCTATGAACACAATGCCGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAATTTGGTGTTTCTGCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCTGAACATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAATTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGTTTATTGGTCAAAAACCTGGTGAACGATTGCCTTCACAAAATATTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTGGTTATTACAAAGGGTTTAACGAAGACAGGAGATGATTACGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGAGACAGAGTACCATATGTTATTATTAAAGCTGCAAAAGGTGCAAAGGCATATGAGAGATCAGAGGATCCTATCTATGTGCTAGAGAACAACATACCCATAGATCCTCATTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAAGAATGCTAGCAAAGAGCTTCTCCATGGAAGTCATACAAGATCTATTTCTATTTCTACACCGTCAAACAGTGGCATATTGAGATTTGCTAAGAAACAGCTTACCTGCATTGGTTGTAAAGCTTTACTTGGCAAGGGTTATCACACTCTCTGTTCACATTGCAAAGGAAGGGAGGCTGAGCTGTACTGTAAAACAGTATCTCAAGTGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGTCGGGATTGTCCAATTTTCTATCGACGAAAAAAGGCACAGAAAGATATGGGTGAAGCAAAGTTGCAATTGGACAGATGGAACTTCTAA 3237 0.426 MSNNASRKRAAPPSQPPPAKQAVMTQEEEFMDEDVFLNETLVSEDEESLILRDIEQRQALANRLSKWTRPPLSADYVAGTRSVLYQQLEIDYVIGESHRELLPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFIRRIEMVQRRSIMYYQQSNSQPFLKVVVALPTMVASCRGILDRGIQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTVKSLSYCQLEFDCLYSELVSHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFETEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAANLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKARQRNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNIPPESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPHYYLENQISKPILKNASKELLHGSHTRSISISTPSNSGILRFAKKQLTCIGCKALLGKGYHTLCSHCKGREAELYCKTVSQVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMGEAKLQLDRWNF 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01382 1078 Gene3D - 813 964 IPR042087 -
Gma06g01382 1078 SUPERFAMILY DNA/RNA polymerases 550 952 IPR043502 -
Gma06g01382 1078 MobiDBLite consensus disorder prediction 1 25 - -
Gma06g01382 1078 SMART polmehr3 292 751 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma06g01382 1078 Gene3D Helix hairpin bin 640 692 - -
Gma06g01382 1078 PRINTS DNA-directed DNA-polymerase family B signature 737 745 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma06g01382 1078 PRINTS DNA-directed DNA-polymerase family B signature 676 688 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma06g01382 1078 PRINTS DNA-directed DNA-polymerase family B signature 584 597 IPR006172 GO:0000166|GO:0003676|GO:0003887
Gma06g01382 1078 Pfam DNA polymerase family B, exonuclease domain 118 461 IPR006133 -
Gma06g01382 1078 CDD DNA_polB_delta_exo 288 517 - -
Gma06g01382 1078 TIGRFAM pol2: DNA polymerase (pol2) 344 952 - -
Gma06g01382 1078 Gene3D Palm domain of DNA polymerase 567 796 IPR023211 -
Gma06g01382 1078 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 81 1078 - -
Gma06g01382 1078 Pfam DNA polymerase family B 525 952 IPR006134 GO:0000166|GO:0003677
Gma06g01382 1078 ProSitePatterns DNA polymerase family B signature. 739 747 IPR017964 GO:0000166|GO:0003676
Gma06g01382 1078 Gene3D DNA Polymerase, chain B, domain 1 88 263 - -
Gma06g01382 1078 SUPERFAMILY Ribonuclease H-like 109 531 IPR012337 -
Gma06g01382 1078 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 81 1078 - -
Gma06g01382 1078 CDD POLBc_delta 566 953 - -
Gma06g01382 1078 Pfam C4-type zinc-finger of DNA polymerase delta 988 1059 IPR025687 -
Gma06g01382 1078 Gene3D - 293 511 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01382 Gma-Chr6 13013715 13028222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01382 5 1078 Core DNA Replication Machinery Family AT5G63960 81.108 0.0 1868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01382 K02327 - gmx:100817379 2127.06