Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01374 ATGGAAGATGAAAGCATCAACCTTCCTCCTGGGTTTTTGTTCTCTCCAACTGATGAAGAACTTGTTGTTCACTTTCTTTATTGTAAGGCTTCTCTTATTCCTTATCATCCCAACATCATTCCCGATCTCGATCCGTCTCAGCTTGATGATCCTTGGGAACTAAATGGTAAGGCGTTGTTAAGTGGAAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACCACTGAAAATGGGTATTGGAAGGACACAGGTGTCACGAAACCTATATTGTCAACCTTTGATAAGGAAGTGGGAATGAAGAAGTACTTGGTATTCCACATTGGTGAAGCTCCACAGGGCACTGAAACCAGTTGGGTAATGCAAGAATATCATATATGTTCCTCTGAGTTTGACACTGCCTCATATCGAAGTGTTAGGAGAAGAAGAAAACATGATCAAAGTTGGAGCAAGTGCGTTTTGTGCAGAGTCTATGAGAAGATCAGATTCAATGTCATTGATTTTCCTGGAGGAGCAGTAGAATTCATCCCTGAAATGAGGTTTATATCCGAATCACGTAAAGAGAGAATACCCTGCTACCGTGTCCATATGATAATGGGCAGCCAATTTTGGACCATAACTTTTTGCAGCAAGGAAGTTGCTGTTAAGATGTATACTGACATGGCTATCAATGTTGCTTCAGCTGCAGCTCTTGCCATGGACGATGTTGTTTTCCCTCAGTATAGGGAAGCAGGAGTCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCAAACCAGTTATTTTCCAATAAATATGATAATGGGAAAGGAAGGCAGATACCAGCTCATTATGGGTCCAAAAAGCACAATTACTTTACAGTAGCATCAACTATTGCTACACAAATTTCCCATGTTGTTGGAGCTGGAGCTGCTTATTCCTTAAAGATGGATAAAAAGGATGCATGTGCTGTCACTTACTTTGGTGATGGTGGCTCAAATTTCCACGCTGCCTTAAATTTTGCAGCAGTTTCGGAGGCCCCAGTTATTTTTATATGCCGGAACAATGGATGGGCTATCAGCACACCCATTTCAGATCAGTTTCGAAGTGATGGTGTTGTCATGAAAGGGCAAGCATATGGAGTCCGTAGCATTGGTGATGGAAATgatgccccggctatctatagtgctattcaagctgctcgtcaaatggcaattactgaagagagaccaattctaatagaaGCTCTTACATATAGAGTGGGACACCACACCACATCAGATGACTCTACCAAGTATCGTCCTGCGAACGAGATTGAATGGTGGAGACtgacacgtgatcctgtggctagatttagaaagtggatagaaaagaatggctggtggaatgatatggctgagtcacagcttataaacaatttgagacagcagcttctacatacaattcaagtagcagagagtgtagaaaaacctccacttgcagataattttagTGATGTTTATGATGCCCCTCCATCTAATCTCCGTGAACGGGAGCAATGGCTGAAGGAGATTGTTAGAAAACAACCACAAGAGTTCCCAACAAATATTTCTGTCTAG 1581 0.3548 MEDESINLPPGFLFSPTDEELVVHFLYCKASLIPYHPNIIPDLDPSQLDDPWELNGKALLSGNQYYFFTKVNENRTTENGYWKDTGVTKPILSTFDKEVGMKKYLVFHIGEAPQGTETSWVMQEYHICSSEFDTASYRSVRRRRKHDQSWSKCVLCRVYEKIRFNVIDFPGGAVEFIPEMRFISESRKERIPCYRVHMIMGSQFWTITFCSKEVAVKMYTDMAINVASAAALAMDDVVFPQYREAGVLLWRGFTLQEFANQLFSNKYDNGKGRQIPAHYGSKKHNYFTVASTIATQISHVVGAGAAYSLKMDKKDACAVTYFGDGGSNFHAALNFAAVSEAPVIFICRNNGWAISTPISDQFRSDGVVMKGQAYGVRSIGDGNDAPAIYSAIQAARQMAITEERPILIEALTYRVGHHTTSDDSTKYRPANEIEWWRLTRDPVARFRKWIEKNGWWNDMAESQLINNLRQQLLHTIQVAESVEKPPLADNFSDVYDAPPSNLREREQWLKEIVRKQPQEFPTNISV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01374 526 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 205 520 IPR029061 -
Gma06g01374 526 Gene3D - 164 525 - -
Gma06g01374 526 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Gma06g01374 526 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 222 525 - -
Gma06g01374 526 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Gma06g01374 526 Pfam Dehydrogenase E1 component 217 485 IPR001017 GO:0016624
Gma06g01374 526 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Gma06g01374 526 ProSiteProfiles NAC domain profile. 8 161 IPR003441 GO:0003677|GO:0006355
Gma06g01374 526 CDD TPP_E1_PDC_ADC_BCADC 223 479 - -
Gma06g01374 526 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 154 222 - -
Gma06g01374 526 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 222 525 - -
Gma06g01374 526 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 154 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01374 Gma-Chr6 12906265 12911911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01374 166 365 Acyl Lipid Metabolism Gene Families AT5G09300 63.291 1.17e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma06g01374 E1_dh 1.6e-72 CL0254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01374 K00166 - gmx:100779198 619.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02047 04 50908442 50920831 Gma06g01374 06 12906265 12911911 GST