Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01354 ATGGATACCAACCAAAACATCACTACTACTGGGAATCACGAGAACATGGGAAGAGATGAACATAACAACATCATCCTCCATGATCATCATCATCATAACCAAATTCCAACGCCCCACTATAACCACCACCCTCTTCACATTGTTCAACCCTCATCAAACGTGGCACCCTCTTTCGTCAGTGATGTTCTAGGAGTAGTCCACTTTGAAGAAGAAGATGAAGATGAAGAAGAGGTTGAAGAAGAGCTCGGAGCCATGAAGGAGATGATGTACAAAATGGCAGTGATGCAACCGGTGGACATAGACCCTGCAAGCGTGAGAAAACCGAAGAGGCGAAACGTGCGAATAAGCGATGACCCTCAGAGTGTGGCTGCCAGGCACAGAAGAGAGAGGATCAGCGAGAAAATTCGCATACTTCAGAGATTGGTCCCTGGTGGAACCAAAATGGACACCGCTTCCATGCTCGATGAAGCCATTCTCTATGTCAAGTTCTTGAAGAGGCAAATCAGTTCCATCACCAACACCAACGCCTCCATGGACATACCGGTTATTGGAATGGAATTCAACACCAGAGGCCATGGCCATGCCGGTGATGCCTCTTCGATCCACCTTTGA 612 0.4755 MDTNQNITTTGNHENMGRDEHNNIILHDHHHHNQIPTPHYNHHPLHIVQPSSNVAPSFVSDVLGVVHFEEEDEDEEEVEEELGAMKEMMYKMAVMQPVDIDPASVRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAILYVKFLKRQISSITNTNASMDIPVIGMEFNTRGHGHAGDASSIHL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01354 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 179 IPR036638 GO:0046983
Gma06g01354 203 SMART finulus 121 170 IPR011598 GO:0046983
Gma06g01354 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 175 IPR045843 GO:0003700|GO:0006355
Gma06g01354 203 Coils Coil 68 88 - -
Gma06g01354 203 CDD bHLH_AtIND_like 116 178 - -
Gma06g01354 203 Pfam Helix-loop-helix DNA-binding domain 125 164 IPR011598 GO:0046983
Gma06g01354 203 Gene3D - 118 182 IPR036638 GO:0046983
Gma06g01354 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Gma06g01354 203 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01354 Gma-Chr6 12736974 12737678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01354 84 168 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 82.353 9.86e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma06g01354 HLH 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01354 - - gmx:100803688 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02064 04 51098938 51099669 Gma06g01354 06 12736974 12737678 GST
Gma05g01877 05 40234542 40235342 Gma06g01354 06 12736974 12737678 PCT
Gma06g01354 06 12736974 12737678 Gma05g01877 05 40234542 40235342 PCT