Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01353 ATGAGTGGAAGTGGCAAAAAGCGCTCTTCAAAGTGGGATTTGAGAGACAATCCTGATTTTTCTCCTGATGATGGTAAGCAATTGCGGTCTGGGTGGTCCTCTGCAGGTGATAAATTAAAGCATTTTTCTGGAGGCAGAGGATCAAATAAGGATAATATTATGAATAAAGATTATAGAGTTTTGGATTCAACAATGGAATGGGATGAGGATGAAAGTTATGACCATAAAATGTCTCCTGGGTTGGATGCATGGAAACATAAGAGACATAATAGTCAATCCCCCAAAAATGGTTGGAGCAGGTCGGTCAGCAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCGGGAGTCAATGACAGAAGTAGAATGCGGGCTGGAGGATCGACACAACCATGTAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGCAGTCACTGTCATTTTCTTCATGATAATCAAAATCACGAGGATGGTTGGGAAGATAAGTACAGGGAAGATGGAGCTCCCAGATATTCTGCTCCCCGCGAGGGTAGAGACTATTCTCTTAAGAGCGGTAGATCTGATGAAGCTTGTATTAATTTTCCAAAAGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATAACAATTCTGATGGGCACAGTAAAGTTTCTGTGGATGGATTAACTAGAGAGAGGGAAATTGATAGAAGGCACAGAGACAGTTCTTTTGAGCAGGGTAGCGGGCATGGACCAAACCGTGGTGATACTCTTTGCAAATTTTTTGCTAATGAAAGTTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGACAGGCAAGCATGTAGAAGCCATAATAGAAGATTAAGAGATGATAGGTGGGCAAGCAATCCTGGAGGAGATTATCATATGCTGGATAGACCGAAATTGAGTGATTCAGTTAGTCCAAATAGAAGGCCAAGGGGTGATAGGTGGGGTTCTGATGGTAACAAGGCTGATGCAGATAAAGTTTGGGACAGTCCAGAGCGGAATGATACAGTGGCTGTCTCTGATACAGCAAAGCTGGTTGAGGACAAAAGTGAAAATGTGGTTGCCGCTGAGCAAGGATTCACTCCTTTGGCTATGAGGGATGGATGGGGTCATAGTTTGGATAAAAGCAGAGTGCATAGTAAACAGCCATTTTCAAGTGATAAGAAGGAAGCTGACAGTTGGATAGCAGGAAATGCTGCCAACATGCACGGTTCCCAGTCAGTAGGTACAGACATTTGGTTGGGTGATGATGCAAAAATGTCTCCTGATTGGGATTACAGGGTGAGATCTTCCAGCTGTATTGAAGAAAAGCATGAACAAAATAAGCATGGGATAACGCAGGGTTTTATGTATTTAGCCACCTCTGAACATGACAGAATACAAATTGCTCCAGGACAAGATTTTAATCAGAATGCAGAGAGTTTTAATCCTTTGCATTCTTCAAGCTGCCAAGTAGTTGGACAAACTCAAGTAGCAGCTCCCATTCTACCTTCACAGGGTGGAATTGTTGATGGTATGCTGAAACAGGAAGTCTCTACTGAGAAAAAATACACTACTGAACCAAATATCATGGATGCTGGCTTATTACAAGTTAGTTCAAGAGATCCTCCTCCAACTGAGAACGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCACTGGCTCATATCCTTGGAACAGGGCAACAGCTGCCACAACTTTATGCTGCTTTAAATTCTCATGATGCAAAGGGCACATCCTCCCTAGCAAAAGCTGAGGTGCTTGCTATGCCTCTTTCCAACACACTCATCAGGCCAGATCCTGCTGTTGGACTCCTGAAGCAGTATGATCCAATGTGTGACAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTAGTGGGGTAACCCCAGCCATTCCCCCATGTAAAAAAGTTGCAGAAGATGTAGTGGAAATTTCATCACAGTCCAACACAGCAAGACAAAATTGTGGCAATTCTTCCAAGTCTGCTGGCTCAGAAGAACTTGTCAAGAGTGATCCTCTAATCCTGTTGCAGCCAGGTCAAAACATTGGGGTTAATAAAGATGATAACAAGGAAGTGTTACCTGAGGAAAGGCAAAAATCTAAAGATGATCCTAAAAATACCAAAGAGAGTGGTCCTTTGGAAAACATGGAGCAAACTGATGGTCCTGATGAGGCAAAGAAAACAAAGGGAATGAAGGGGAGTCGTGCATTTAAATTTGCATTGGTCGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGATGGTCAAATCACCAAAGATGATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACACAGGAGAAAATTGACCACTATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2481 0.4272 MSGSGKKRSSKWDLRDNPDFSPDDGKQLRSGWSSAGDKLKHFSGGRGSNKDNIMNKDYRVLDSTMEWDEDESYDHKMSPGLDAWKHKRHNSQSPKNGWSRSVSSRSRSPPHGFRWDSGVNDRSRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDNQNHEDGWEDKYREDGAPRYSAPREGRDYSLKSGRSDEACINFPKGRCRMGASCKFVHHNNSDGHSKVSVDGLTREREIDRRHRDSSFEQGSGHGPNRGDTLCKFFANESCRNGKYCRFSHDRQACRSHNRRLRDDRWASNPGGDYHMLDRPKLSDSVSPNRRPRGDRWGSDGNKADADKVWDSPERNDTVAVSDTAKLVEDKSENVVAAEQGFTPLAMRDGWGHSLDKSRVHSKQPFSSDKKEADSWIAGNAANMHGSQSVGTDIWLGDDAKMSPDWDYRVRSSSCIEEKHEQNKHGITQGFMYLATSEHDRIQIAPGQDFNQNAESFNPLHSSSCQVVGQTQVAAPILPSQGGIVDGMLKQEVSTEKKYTTEPNIMDAGLLQVSSRDPPPTENVVGKEQLAQLTNLSASLAHILGTGQQLPQLYAALNSHDAKGTSSLAKAEVLAMPLSNTLIRPDPAVGLLKQYDPMCDSVEPKSAVASSGVTPAIPPCKKVAEDVVEISSQSNTARQNCGNSSKSAGSEELVKSDPLILLQPGQNIGVNKDDNKEVLPEERQKSKDDPKNTKESGPLENMEQTDGPDEAKKTKGMKGSRAFKFALVEFVKELLKPTWKDGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDHYLSFSKPKLNKLVQAYVEKVQKA 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01353 826 MobiDBLite consensus disorder prediction 217 248 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 159 184 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 689 743 - -
Gma06g01353 826 ProSiteProfiles Zinc finger C3H1-type profile. 187 214 IPR000571 GO:0046872
Gma06g01353 826 SUPERFAMILY CCCH zinc finger 250 275 IPR036855 GO:0046872
Gma06g01353 826 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Gma06g01353 826 MobiDBLite consensus disorder prediction 656 677 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 217 242 - -
Gma06g01353 826 Pfam CCCH-type zinc finger 255 275 IPR041367 -
Gma06g01353 826 MobiDBLite consensus disorder prediction 656 676 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 94 110 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 69 132 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 302 339 - -
Gma06g01353 826 Gene3D - 124 226 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 288 342 - -
Gma06g01353 826 Pfam RNA-binding, Nab2-type zinc finger 192 211 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 1 55 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 8 23 - -
Gma06g01353 826 MobiDBLite consensus disorder prediction 699 721 - -
Gma06g01353 826 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 153 IPR000571 GO:0046872
Gma06g01353 826 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Gma06g01353 826 MobiDBLite consensus disorder prediction 69 89 - -
Gma06g01353 826 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 824 - -
Gma06g01353 826 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 824 - -
Gma06g01353 826 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Gma06g01353 826 SMART c3hfinal6 187 213 IPR000571 GO:0046872
Gma06g01353 826 SMART c3hfinal6 250 276 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01353 Gma-Chr6 12720703 12724889 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma06g01353 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01353 - K22909 gmx:100803151 1681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02065 04 51111564 51120803 Gma06g01353 06 12720703 12724889 GST