Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01352 ATGAGAAAACCCACTAAACCCACATTTCTCCATTTCCCAATCTCAATTCTCAGATCCAGCTTCCTCCTCCTTCTCATCTCCATGGCCTCCATTTTCACCCTCTTCCTCATCTTCTTCTTCCTCCACCACCCTCACTCCGCCGTGGCTCAGATCCACCAAGCCTGCAAAGCCACGCGCTTCCCTCTCCAATGCCACTCCtCCCTCCTCCCCAACCTCCCCTCCAACCCCACCCCCCTCCAAATCATCCATTCCGCCCTCACAACCTCCACCTCCAACCTCCTCCTCGCGCGATCCAAGGTGCAGTCCATCGTCGACGCCTCCCCAGACAACCACACCCGCTCCACCGCCGCAAAGAGCTGCCTCCAGGTCCTCCACTACTCCCACCACCGCACCTCCCTCGCCGCCTCCGCCCTCCCCCGCGGCGCCACCAAACACGCCCGCGCCTGGATGAGCGCCTCCCTCGGCTACCAATACGGCTGCTGGAACGGCCTCAAGTACATCAATCACACCTCCCTCGTCGCCCAAACGATGTCGTTCCTCGACTCTCTCACCATTCTCTCCAGCAACGCGCTCAGCATGATCGTCTCCTACGACAGATTCGGAAACGACACCGCGTCTTGGAGGCCGCCCATGACGGAGCGCGACGGGTTCTGGGAGCCATCTGTTACGGAGGGATTCGGGGTGGGACCCGCGGTGCCGTCAAAGTTGACGGCGGACGTTACGGTGTGTAAGGGGAAGGGGAAGGGTGAGGGGCGTTATTACGAGACGGTGCAGGAAGCGGTTAATGCGGCGCCGGATGAGGGGGAAAAGAGGTTTGTGATATATATAAAAGAAGGGGTTTATGAAGAGAGGGTGAGGGTTCCGTTGAAGAAGAGGAATGTGGTGTTCTTGGGAGATGGCATGGGCAAAACTGTCATTACGGGATCAGCTAACGTGGGCCAGCCCGGGATGACAACCTACAACTCTGCAACAGTAGGGGTTGCTGGGGATGGATTTATAGCAAAGGATCTCACAATCCAAAATACAGCCGGTGCTAATGCTCACCAAGCAGTGGCCTTCAGATCAGACAGTGATCTTTCTGTCATTGAGAACTGTGAATTCATTGGCAATCAAGATACTCTTTATGCTCATTCCCTGCGCCAATTTTATAGATCTTGCCGCATAATTGGCAACGTGGACTTCATCTTCGGAAACTCTGCAGCAATCTTCCAAGACTGCGAAATCCTAGTCCGGCCCAGGCAAGCCAGACCAGAGAAGGGAGAGAACAACGCAATTACCGCACATGGCAGGACAGACCCTGCTCAGTCAACAGGGTTTGTTTTCCAGAACTGCATGGTTAATGGTACCGAGGAATACATGGCATTGTATTATAGCAAGCCTAAAGTTCACAAGAACTATCTGGGGAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATCCATTCATTCTTCGAAGCCCTTATCACACCACAGGGCTGGATGCCATGGAGTGGGGATTTTGCACTGAAAACACTTTATTATGGGGAGTTCCAGAACTCAGGACCTGGTTCTAATCTGACTCAGAGGGTGCCCTGGAGTAACCAGGTCCCAGCCGAGCATGTGTTCTCGTATTCAGTGCAGAGTTTTATTCAAGGAGATGATTGGAATCATCATCTCAGTTAG 1662 0.5361 MRKPTKPTFLHFPISILRSSFLLLLISMASIFTLFLIFFFLHHPHSAVAQIHQACKATRFPLQCHSSLLPNLPSNPTPLQIIHSALTTSTSNLLLARSKVQSIVDASPDNHTRSTAAKSCLQVLHYSHHRTSLAASALPRGATKHARAWMSASLGYQYGCWNGLKYINHTSLVAQTMSFLDSLTILSSNALSMIVSYDRFGNDTASWRPPMTERDGFWEPSVTEGFGVGPAVPSKLTADVTVCKGKGKGEGRYYETVQEAVNAAPDEGEKRFVIYIKEGVYEERVRVPLKKRNVVFLGDGMGKTVITGSANVGQPGMTTYNSATVGVAGDGFIAKDLTIQNTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYRSCRIIGNVDFIFGNSAAIFQDCEILVRPRQARPEKGENNAITAHGRTDPAQSTGFVFQNCMVNGTEEYMALYYSKPKVHKNYLGRPWKEYSRTVFIHSFFEALITPQGWMPWSGDFALKTLYYGEFQNSGPGSNLTQRVPWSNQVPAEHVFSYSVQSFIQGDDWNHHLS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01352 553 Pfam Plant invertase/pectin methylesterase inhibitor 50 193 IPR006501 GO:0004857
Gma06g01352 553 SMART PMEI_2 46 193 IPR006501 GO:0004857
Gma06g01352 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 196 IPR035513 -
Gma06g01352 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 194 IPR035513 -
Gma06g01352 553 Pfam Pectinesterase 240 546 IPR000070 GO:0030599|GO:0042545
Gma06g01352 553 SUPERFAMILY Pectin lyase-like 238 550 IPR011050 -
Gma06g01352 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 32 549 - -
Gma06g01352 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 194 IPR006501 GO:0004857
Gma06g01352 553 PANTHER PECTINESTERASE 32 549 - -
Gma06g01352 553 CDD PMEI-like_3 54 194 - -
Gma06g01352 553 Gene3D - 233 552 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01352 Gma-Chr6 12711459 12713706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01352 46 548 Carbohydrate Esterase AT5G09760 65.820 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01352 - - gmx:100802102 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01875 05 40205992 40207337 Gma06g01352 06 12711459 12713706 PCT
Gma08g01360 08 11531602 11534113 Gma06g01352 06 12711459 12713706 PCT
Gma06g01352 06 12711459 12713706 Gma05g01875 05 40205992 40207337 PCT
Gma06g01352 06 12711459 12713706 Gma08g01360 08 11531602 11534113 PCT