Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01347 ATGGCTCCAGCCACCACCAATTCCTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGTCGGCGCACGCAGGCGCCGCGCCAGCTGGACGGCgactcgccgccagtgaagaagtaccggatgctgtcagagataatggcgcgcgcgccgtacgcggtggtggagagagaaacttacagcgacctcttgtgcgaccaatgcggctccggcgagctgccggaggagctgcttctctgcgacaaaTGCGATAAAGGCTTTCACATGAAATGCGTGAGGCCTATCGTCGTGAGGATTCCGATTGGATCGTGGCTTTGCCCTAACTGTCAAGGAGGGAAGAGAGTGCGGCCTTTCTCTCAGAAGAAGATAATCGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGATAAGCGTTCCTCTCAGGATGCTAAAAAGCGTAAGAAATGTTCACGACCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCTTAACCGGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATATGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATGTGCAAATCAAGCCTTACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAACAATGCATTGCTTTGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACGATTATTGCTGAATACACTGGTGATGTGGATTACCTTGACACACGGGAACGTGATGACTGTGACAGTATGATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCCATTCGTGATATTTCCAAGGGAGAGAGGCTATATTATGATTATAATGGTCATGAGTATCAATACCCGACTCATCATTTTGTCTGA 1128 0.3874 MAPATTNSSPSAQRHVGFSRRTQAPRQLDGDSPPVKKYRMLSEIMARAPYAVVERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPNCQGGKRVRPFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRKKCSRPLVLHKKKRRLLPFVPTKDLNRRLKQMGSLASALTALNMEFSDHLTYLPGMAPRCANQALLENGGMQTLSKEDMETLEQCIALSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDTRERDDCDSMMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVAIRDISKGERLYYDYNGHEYQYPTHHFV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01347 375 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 18 373 - -
Gma06g01347 375 MobiDBLite consensus disorder prediction 1 20 - -
Gma06g01347 375 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Gma06g01347 375 Gene3D SET domain 145 375 IPR046341 -
Gma06g01347 375 SMART PHD_3 62 108 IPR001965 -
Gma06g01347 375 MobiDBLite consensus disorder prediction 1 33 - -
Gma06g01347 375 CDD PHD_RSF1 62 107 - -
Gma06g01347 375 SUPERFAMILY FYVE/PHD zinc finger 50 114 IPR011011 -
Gma06g01347 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 120 IPR013083 -
Gma06g01347 375 PANTHER HISTONE ACETYLTRANSFERASE 18 373 - -
Gma06g01347 375 Pfam SET domain 277 363 IPR001214 GO:0005515
Gma06g01347 375 SUPERFAMILY SET domain 197 366 IPR046341 -
Gma06g01347 375 Pfam PHD-finger 63 108 IPR019787 -
Gma06g01347 375 ProSiteProfiles SET domain profile. 241 363 IPR001214 GO:0005515
Gma06g01347 375 CDD SET_ATXR5_6-like 238 375 - -
Gma06g01347 375 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Gma06g01347 375 SMART set_7 242 369 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01347 Gma-Chr6 12686480 12690497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01347 58 129 C2H2 Transcription Factor Family AT3G01460 34.722 9.24e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma06g01347 SET 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01347 K24406 - gmx:100808815 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02067 04 51142796 51146374 Gma06g01347 06 12686480 12690497 GST