Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01344 ATGGTGAGAGCAAGAGACGATCTATGCATAAGCGTTCCCAGCTTCTTCAAGTGCCCCATCTCTCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCCACCATGCAACTCCTCCATACCAAAGACTTCATCCCCAACCGTACTCTCCAAAGCCTCATCCAGATCTGGTCCGATTCGCTTCTTCGCCACCCAACCCCTTCCGAACCGCTCCCTTCCCCTGACCAAGTCCTCCGAACCGTCTTCGACTTCAAATCCGACTCGGACTCCCTCCGGTTCGGTTCGCTCTCGAAACTCCTCCTCTTCGCCAAAGATTCTCTCCAAAACAAACTTTTCCTCGCAAAATTAGAAGGCTTCGTGAATCAACTCGTTCGCTTCCTCCATAATGTCGACGTCGGAGTAACCGCGGGAACGAGTGTTGAATTTCTCGAACAAGTCGTTATCGTGTTGGGTTTGATTCTCGATAGCATCGAGGATCGCGAGGGATTGAAAAACTCTATGCTGAAAGGAAAGAAACAAAGCTTAGATTCTCTGCTTTTAGTTCTCCAACGAGGAAGCTTGGAATCAAAAATTGCCTCCGCTAGGGTTCTTCAATTCGTCGCCGTGGACGCGGAGGCGAAGATTTCAATCGCCGAGAAGGAAAGTGTGGTGGCGGAGTTGCTGAAATCGGCGGCGCCGGAGAAAGATGCGGCGCTGATCGAGGCCGCTCTGGCGAGCCTGGTGGCGATTTCGGCGCCGAAGCGGaacaagttgaagctggtgaacctcggagcggtgaaggcgatgacgaggctgttgacggaggcgaatttgggcgccgcggcggtggagaaggtgttgaagattgtggagacggcGTCATCGACGAGGGAGGGGCGGAGCGAGATATGCGAGGAGGCGACGGCGGCGTGTGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCTTGTGTTACCTGTTCCGCGATCGCAAGGCACAGGAGGCGGTGACGCAGAACAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGTGCGCCGCACGTGCGACAAATGTGCACCGATTTGCTCAAGATTTTTCTGGCGAACTCCAAGTCTTGCCTTTCGTGCTACGACACCAAAACCACGCATATCATGCCGTTTTGA 1254 0.5016 MVRARDDLCISVPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLHTKDFIPNRTLQSLIQIWSDSLLRHPTPSEPLPSPDQVLRTVFDFKSDSDSLRFGSLSKLLLFAKDSLQNKLFLAKLEGFVNQLVRFLHNVDVGVTAGTSVEFLEQVVIVLGLILDSIEDREGLKNSMLKGKKQSLDSLLLVLQRGSLESKIASARVLQFVAVDAEAKISIAEKESVVAELLKSAAPEKDAALIEAALASLVAISAPKRNKLKLVNLGAVKAMTRLLTEANLGAAAVEKVLKIVETASSTREGRSEICEEATAACVAAVLSKVLKVSSAATEHAVTTLWSLCYLFRDRKAQEAVTQNNGLTKILLLMQSNCAPHVRQMCTDLLKIFLANSKSCLSCYDTKTTHIMPF 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01344 417 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Gma06g01344 417 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 6 417 - -
Gma06g01344 417 SUPERFAMILY ARM repeat 70 403 IPR016024 -
Gma06g01344 417 CDD RING-Ubox_PUB 16 58 IPR045210 -
Gma06g01344 417 SUPERFAMILY RING/U-box 6 79 - -
Gma06g01344 417 Gene3D - 96 406 IPR011989 -
Gma06g01344 417 PANTHER WDSAM1 PROTEIN 6 417 IPR045185 GO:0061630
Gma06g01344 417 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Gma06g01344 417 Pfam U-box domain 12 79 IPR003613 GO:0004842|GO:0016567
Gma06g01344 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01344 Gma-Chr6 12645087 12646598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01344 5 417 U-box Gene Family AT5G64660 50.474 2.33e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01344 - - gmx:100801033 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01868 05 40137371 40138969 Gma06g01344 06 12645087 12646598 PCT
Gma08g01354 08 11478596 11479852 Gma06g01344 06 12645087 12646598 PCT
Gma06g01344 06 12645087 12646598 Gma05g01868 05 40137371 40138969 PCT
Gma06g01344 06 12645087 12646598 Gma08g01354 08 11478596 11479852 PCT