Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01332 ATGGATTTGGACGATTTCCGATCCGTATTGGACACCGCGGGCGTCGACGTGTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGATTCCGCCGGTGAGCTGAAGCGCCGCCGCGACGGAATCGTCGAGCGCCTCTACGCCGCCACGGCGGCTACTCCGAAGTGCCGGATTTGCGACGACGGAGGCAATGACCTCAACGGTCACCAAATCAAGAAGCAGAGCAGCCCCAGCCCTGAACGGCAACCGCACCAACGCCGCGCCGCTGCCATCGCAGCTGCCGCTTCCCCGGCGACGCCGCAGTCTCTCGAAAACGACAACGACGGCGAGGAGGATTTAGATCCTTACGGTGGTTTGTTCGACGACGAACAGAAGAAGATTCTCGAGATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCTTTGGTGGAGTTGCTGCAAAGCCTAGCGGACATGGATATTACATTCCAAGCGTTGAAGGAAACTGACATCGGGAGGCACGTGAATCGGTTACGGAAACATCCTTCAAACGACGTACGGCGATTGGTGAAGTTGCTTGTCAGGAAGTGGAAGGAAATTGTTGATGAATGGGTGAAGTTGAATCCTCAGGGAAGAAGCAACACTCTGATGGCTGATGGAGACTCGCCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGCAGCAGATTCCTGATTTTGCATACTCTCCCAATCCACACAATGGTAGCTCAGGGTCTGACCGTAACAACTCAGAAGCAGAACACAAACCCAAAGTAGTTCCCCGCAGTGAACCTAGGCCAAAACCCGCGCCATCACCCTCAGTTTCAACCCCTGCTTCCGCTACTCAAAACAGACAGAGGGATAGCAATTTTGACGCGGAGAGGCTTGCTTCCGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAATTGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCGAAGTCAAAACCCAAGAATAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1083 0.5374 MDLDDFRSVLDTAGVDVWMFIDAAIAVASADSAGELKRRRDGIVERLYAATAATPKCRICDDGGNDLNGHQIKKQSSPSPERQPHQRRAAAIAAAASPATPQSLENDNDGEEDLDPYGGLFDDEQKKILEIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGRSNTLMADGDSPPVQKTTQNGHHHQQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPRPKPAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHELPKSKPKNNAFFGKNKGGGGGGGSQGRHW 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01332 360 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 210 IPR035441 -
Gma06g01332 360 Coils Coil 298 325 - -
Gma06g01332 360 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Gma06g01332 360 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 360 - -
Gma06g01332 360 MobiDBLite consensus disorder prediction 69 83 - -
Gma06g01332 360 MobiDBLite consensus disorder prediction 254 268 - -
Gma06g01332 360 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Gma06g01332 360 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
Gma06g01332 360 MobiDBLite consensus disorder prediction 207 253 - -
Gma06g01332 360 MobiDBLite consensus disorder prediction 68 119 - -
Gma06g01332 360 CDD TFIIS_I 125 198 - -
Gma06g01332 360 MobiDBLite consensus disorder prediction 332 360 - -
Gma06g01332 360 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 360 IPR044790 -
Gma06g01332 360 SMART TFS2_5 128 199 IPR003617 GO:0005634
Gma06g01332 360 MobiDBLite consensus disorder prediction 207 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01332 Gma-Chr6 12521619 12523614 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gma06g01332 Med26 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01332 - - gmx:100804034 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02082 04 51310363 51312292 Gma06g01332 06 12521619 12523614 GST
Gma05g01850 05 39994549 39999040 Gma06g01332 06 12521619 12523614 PCT
Gma08g01342 08 11356006 11357893 Gma06g01332 06 12521619 12523614 PCT
Gma06g01332 06 12521619 12523614 Gma05g01850 05 39994549 39999040 PCT
Gma06g01332 06 12521619 12523614 Gma08g01342 08 11356006 11357893 PCT