Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01326 ATGGACTTCGACGAGTACGATTACTTGGAGAAAACAGTGGAGGAGCAAGAGGACCACGACAGCAGCCGGAAGAAGAAGGAGAGCGAGAGGAGCTACAGGAAGCGCGAGGAGATCGACGAGGGAATCGAAGAGACGAAGAGCAAGAGGTCCAGGGGCGACGAAGAGAACGGCTCCAAGAAGGATAAGGACCGCGAAGAACGCGACAGGGAGCGCCGCAGGGACAGGGATAGAGATGGTGAGAGAAGTAGCAGAGACAGGGATAGGGATAGGGATAGGGAGAAGGAGAGAgagaaagggagggaacggagggaaaaggataaagagagggagaagagggagaaggagaaagagaaggagaaggagagggaaagagaaagaagggagagggaaCGGGAACGGGAAGAGAGAGAGAGGTCTCGGAGGAGTAGGAGTCGTTCCGAGAGAGAAAGAGAAAGAGAACGGGATTTCGACACCAGAGATAGCAGGAGATTTAGGGACAAAAAAGAGGCAGCGGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCTTAAAGGCATCGGAGAGGGATGCTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTAGGACAACCTGTAATGGTCAAGCCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGAGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTATATGTGGGGAACCTTCACTTTAACATGACGGAGAGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCGGTAGAGATTGTACAACTACCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCGCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACAGATCATGTTGGAAACCAAGATACAACTGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGTCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCCATTGCGAATGGGTCATCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAGTACCAGCAGTTGCACCAGCTGTCCCAACACAAATTATGCCTATCCCAGTGACTGAACCTGTTGGAAACCCCAGTGAGTGTTTACTGTTGAAGAACATGTTTGATCCAAACACTGAGACCGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGTTCCAAATATGGACGAGTGAAGCATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGCAGAATGATATCTGCTATCTATATGCTACCTCAGATGTATGAAACCAAATTTAAAGGGAGAGTGCAACAACAAACGCACCAGATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGA 2391 0.4571 MDFDEYDYLEKTVEEQEDHDSSRKKKESERSYRKREEIDEGIEETKSKRSRGDEENGSKKDKDREERDRERRRDRDRDGERSSRDRDRDRDREKEREKGRERREKDKEREKREKEKEKEKERERERREREREREERERSRRSRSRSERERERERDFDTRDSRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEIVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLSLNAQSRALLMQKLDRSGIAASIGLPIANGSSPAQQAIMPIGNPGIVPAVAPAVPTQIMPIPVTEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMLPQMYETKFKGRVQQQTHQMDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSAGYQHPLPVDQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDAQPPPRGRGRGRGRGRGRGRDRGPPA 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01326 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 251 IPR000504 GO:0003723
Gma06g01326 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 478 531 IPR000504 GO:0003723
Gma06g01326 796 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 356 IPR000504 GO:0003723
Gma06g01326 796 CDD RRM2_RBM23_RBM39 286 358 - -
Gma06g01326 796 SUPERFAMILY RNA-binding domain, RBD 175 262 IPR035979 GO:0003676
Gma06g01326 796 Gene3D - 567 673 IPR036882 GO:0003676
Gma06g01326 796 CDD RRM3_RBM39_like 454 536 - -
Gma06g01326 796 SUPERFAMILY RNA-binding domain, RBD 284 361 IPR035979 GO:0003676
Gma06g01326 796 PANTHER CC1-LIKE SPLICING FACTOR 1 548 - -
Gma06g01326 796 SUPERFAMILY RNA-binding domain, RBD 452 535 IPR035979 GO:0003676
Gma06g01326 796 MobiDBLite consensus disorder prediction 12 181 - -
Gma06g01326 796 SMART rrm2_1 461 534 IPR003954 GO:0003676
Gma06g01326 796 TIGRFAM SF-CC1: splicing factor, CC1-like family 66 545 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gma06g01326 796 SUPERFAMILY AlbA-like 571 684 IPR036882 GO:0003676
Gma06g01326 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Gma06g01326 796 Pfam Alba 574 638 IPR002775 GO:0003676
Gma06g01326 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
Gma06g01326 796 Gene3D - 451 558 IPR012677 -
Gma06g01326 796 MobiDBLite consensus disorder prediction 693 796 - -
Gma06g01326 796 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 548 - -
Gma06g01326 796 Gene3D - 280 376 IPR012677 -
Gma06g01326 796 Coils Coil 98 149 - -
Gma06g01326 796 CDD RRM1_RBM39_like 183 255 - -
Gma06g01326 796 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 377 473 IPR029123 -
Gma06g01326 796 Gene3D - 175 268 IPR012677 -
Gma06g01326 796 SMART rrm1_1 456 534 IPR000504 GO:0003723
Gma06g01326 796 SMART rrm1_1 285 358 IPR000504 GO:0003723
Gma06g01326 796 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gma06g01326 796 MobiDBLite consensus disorder prediction 1 182 - -
Gma06g01326 796 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 460 538 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01326 Gma-Chr6 12471567 12482958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01326 256 357 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 1.08e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01326 K13091 - gmx:100802446 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02085 04 51336328 51339903 Gma06g01326 06 12471567 12482958 GST